RNA–Protein interactions for RNA: ENST00000505199.5

SNCA-208, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 411 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-208ENST00000505199 CCDC87Q9NVE4 849 aa16.18■□□□□ 0.18
SNCA-208ENST00000505199 MIS18AQ9NYP9 233 aa16.18■□□□□ 0.18
SNCA-208ENST00000505199 TFCP2L1Q9NZI6 479 aa16.18■□□□□ 0.18
SNCA-208ENST00000505199 MYH14Q7Z406 1995 aaKnown RBP16.18■□□□□ 0.18
SNCA-208ENST00000505199 E9PSI1 815 aa16.17■□□□□ 0.18
SNCA-208ENST00000505199 RTCBQ9Y3I0 505 aaKnown RBP16.17■□□□□ 0.18
SNCA-208ENST00000505199 IL6STP40189 918 aaPredicted RBP16.16■□□□□ 0.18
SNCA-208ENST00000505199 ZNF827Q17R98 1081 aa16.16■□□□□ 0.18
SNCA-208ENST00000505199 CASZ1Q86V15 1759 aa16.15■□□□□ 0.18
SNCA-208ENST00000505199 KCNQ4P56696 695 aa16.15■□□□□ 0.18
SNCA-208ENST00000505199 INTS5Q6P9B9 1019 aaKnown RBP16.15■□□□□ 0.18
SNCA-208ENST00000505199 LAS1LQ9Y4W2 734 aaKnown RBP16.15■□□□□ 0.18
SNCA-208ENST00000505199 ZBED9Q6R2W3 1325 aa16.15■□□□□ 0.18
SNCA-208ENST00000505199 TUBGCP6Q96RT7 1819 aa16.15■□□□□ 0.18
SNCA-208ENST00000505199 A0A087WZG4 1122 aa16.14■□□□□ 0.17
SNCA-208ENST00000505199 GNPATO15228 680 aa16.14■□□□□ 0.17
SNCA-208ENST00000505199 ZNF428Q96B54 188 aa16.14■□□□□ 0.17
SNCA-208ENST00000505199 PNPLA7Q6ZV29 1317 aa16.14■□□□□ 0.17
SNCA-208ENST00000505199 FANCIQ9NVI1 1328 aa16.14■□□□□ 0.17
SNCA-208ENST00000505199 CT47B1P0C2W7 299 aaPredicted RBP16.13■□□□□ 0.17
SNCA-208ENST00000505199 TRAPPC3LQ5T215 181 aa16.13■□□□□ 0.17
SNCA-208ENST00000505199 USP16Q9Y5T5 823 aa16.13■□□□□ 0.17
SNCA-208ENST00000505199 COL24A1Q17RW2 1714 aa16.12■□□□□ 0.17
SNCA-208ENST00000505199 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.12■□□□□ 0.17
SNCA-208ENST00000505199 EIF5P55010 431 aaKnown RBP16.12■□□□□ 0.17
SNCA-208ENST00000505199 HNRNPUQ00839 825 aaKnown RBP eCLIP16.12■□□□□ 0.17
SNCA-208ENST00000505199 R3HDM1Q15032 1099 aaKnown RBP16.12■□□□□ 0.17
SNCA-208ENST00000505199 DUSP27Q5VZP5 1158 aa16.12■□□□□ 0.17
SNCA-208ENST00000505199 NPM2Q86SE8 214 aaKnown RBP16.12■□□□□ 0.17
SNCA-208ENST00000505199 TRMT2AQ8IZ69 625 aaKnown RBP16.12■□□□□ 0.17
SNCA-208ENST00000505199 CACNA1FO60840 1977 aa16.12■□□□□ 0.17
SNCA-208ENST00000505199 SLFN5Q08AF3 891 aa16.11■□□□□ 0.17
SNCA-208ENST00000505199 ZBTB1Q9Y2K1 713 aa16.11■□□□□ 0.17
SNCA-208ENST00000505199 SALL2Q9Y467 1007 aaPredicted RBP16.11■□□□□ 0.17
SNCA-208ENST00000505199 COL15A1P39059 1388 aa16.11■□□□□ 0.17
SNCA-208ENST00000505199 MTFR1LQ9H019 292 aa16.1■□□□□ 0.17
SNCA-208ENST00000505199 DBF4Q9UBU7 674 aaPredicted RBP16.1■□□□□ 0.17
SNCA-208ENST00000505199 C4AP0C0L4 1744 aa16.1■□□□□ 0.17
SNCA-208ENST00000505199 RFC4P35249 363 aa16.09■□□□□ 0.17
SNCA-208ENST00000505199 HDGFL1Q5TGJ6 251 aa16.09■□□□□ 0.17
SNCA-208ENST00000505199 CCDC30Q5VVM6 783 aa16.09■□□□□ 0.17
SNCA-208ENST00000505199 TSR2Q969E8 191 aaKnown RBP16.09■□□□□ 0.17
SNCA-208ENST00000505199 DDX21Q9NR30 783 aaKnown RBP eCLIP16.09■□□□□ 0.17
SNCA-208ENST00000505199 PRAMEF22A3QJZ6 481 aa16.08■□□□□ 0.16
SNCA-208ENST00000505199 TWISTNBQ3B726 338 aaPredicted RBP16.08■□□□□ 0.16
SNCA-208ENST00000505199 COL23A1Q86Y22 540 aaPredicted RBP16.08■□□□□ 0.16
SNCA-208ENST00000505199 NLGN1Q8N2Q7 840 aa16.08■□□□□ 0.16
SNCA-208ENST00000505199 ARHGEF1Q92888 912 aaKnown RBP16.08■□□□□ 0.16
SNCA-208ENST00000505199 SPINK5Q9NQ38 1064 aaPredicted RBP16.08■□□□□ 0.16
SNCA-208ENST00000505199 NARFQ9UHQ1 456 aa16.08■□□□□ 0.16
SNCA-208ENST00000505199 USP42Q9H9J4 1324 aaKnown RBP16.08■□□□□ 0.16
SNCA-208ENST00000505199 NBPF26B4DH59 902 aa16.07■□□□□ 0.16
SNCA-208ENST00000505199 A1BGP04217 495 aa16.07■□□□□ 0.16
SNCA-208ENST00000505199 NBPF10Q6P3W6 841 aaKnown RBP16.07■□□□□ 0.16
SNCA-208ENST00000505199 CLEC4GQ6UXB4 293 aa16.07■□□□□ 0.16
SNCA-208ENST00000505199 NBPF15Q8N660 670 aa16.07■□□□□ 0.16
SNCA-208ENST00000505199 C8orf58Q8NAV2 365 aa16.07■□□□□ 0.16
SNCA-208ENST00000505199 HYPKQ9NX55 129 aa16.07■□□□□ 0.16
SNCA-208ENST00000505199 LRP5O75197 1615 aa16.06■□□□□ 0.16
SNCA-208ENST00000505199 ERVV-1B6SEH8 477 aa16.06■□□□□ 0.16
SNCA-208ENST00000505199 ZPR1O75312 459 aa16.06■□□□□ 0.16
SNCA-208ENST00000505199 CANXP27824 592 aaKnown RBP16.06■□□□□ 0.16
SNCA-208ENST00000505199 PDIA6Q15084 440 aa16.06■□□□□ 0.16
SNCA-208ENST00000505199 LRP10Q7Z4F1 713 aa16.06■□□□□ 0.16
SNCA-208ENST00000505199 SCN7AQ01118 1682 aa16.05■□□□□ 0.16
SNCA-208ENST00000505199 PSDA5PKW4 1024 aaPredicted RBP16.05■□□□□ 0.16
SNCA-208ENST00000505199 VAMP4O75379 141 aa16.05■□□□□ 0.16
SNCA-208ENST00000505199 AMIGO3Q86WK7 504 aa16.05■□□□□ 0.16
SNCA-208ENST00000505199 SPON1Q9HCB6 807 aa16.05■□□□□ 0.16
SNCA-208ENST00000505199 ZNF652Q9Y2D9 606 aa16.05■□□□□ 0.16
SNCA-208ENST00000505199 EIF2S2P20042 333 aaKnown RBP16.04■□□□□ 0.16
SNCA-208ENST00000505199 EXOSC9Q06265 439 aaKnown RBP16.04■□□□□ 0.16
SNCA-208ENST00000505199 KRT24Q2M2I5 525 aa16.04■□□□□ 0.16
SNCA-208ENST00000505199 STK31Q9BXU1 1019 aa16.04■□□□□ 0.16
SNCA-208ENST00000505199 BCORQ6W2J9 1755 aa16.04■□□□□ 0.16
SNCA-208ENST00000505199 PHF14O94880 888 aa16.03■□□□□ 0.16
SNCA-208ENST00000505199 TSPYL6Q8N831 410 aa16.03■□□□□ 0.16
SNCA-208ENST00000505199 SENP3-EIF4A1A0A087X0R7 540 aa16.02■□□□□ 0.16
SNCA-208ENST00000505199 GYS1P13807 737 aa16.02■□□□□ 0.16
SNCA-208ENST00000505199 KIF6Q6ZMV9 814 aa16.02■□□□□ 0.16
SNCA-208ENST00000505199 DZIP3Q86Y13 1208 aaKnown RBP16.02■□□□□ 0.16
SNCA-208ENST00000505199 CHPF2Q9P2E5 772 aa16.02■□□□□ 0.16
SNCA-208ENST00000505199 MSH5O43196 834 aa16.01■□□□□ 0.15
SNCA-208ENST00000505199 POLD1P28340 1107 aa16.01■□□□□ 0.15
SNCA-208ENST00000505199 ALDH1L2Q3SY69 923 aa16.01■□□□□ 0.15
SNCA-208ENST00000505199 CDCA7LQ96GN5 454 aa16.01■□□□□ 0.15
SNCA-208ENST00000505199 SGIP1Q9BQI5 828 aa16.01■□□□□ 0.15
SNCA-208ENST00000505199 MAP3K15Q6ZN16 1313 aa16■□□□□ 0.15
SNCA-208ENST00000505199 ELL2O00472 640 aaPredicted RBP16■□□□□ 0.15
SNCA-208ENST00000505199 CAMTA2O94983 1202 aa16■□□□□ 0.15
SNCA-208ENST00000505199 BRPF1P55201 1214 aaPredicted RBP16■□□□□ 0.15
SNCA-208ENST00000505199 PDGFDQ9GZP0 370 aaPredicted RBP16■□□□□ 0.15
SNCA-208ENST00000505199 ATP10DQ9P241 1426 aa16■□□□□ 0.15
SNCA-208ENST00000505199 DDX58O95786 925 aaKnown RBP15.99■□□□□ 0.15
SNCA-208ENST00000505199 MYL6BP14649 208 aa15.99■□□□□ 0.15
SNCA-208ENST00000505199 PTGER2P43116 358 aa15.99■□□□□ 0.15
SNCA-208ENST00000505199 HSP90AB3PQ58FF7 597 aa15.99■□□□□ 0.15
SNCA-208ENST00000505199 USPL1Q5W0Q7 1092 aa15.98■□□□□ 0.15
SNCA-208ENST00000505199 GIGYF2Q6Y7W6 1299 aaKnown RBP15.98■□□□□ 0.15
SNCA-208ENST00000505199 COPS6Q7L5N1 327 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms