RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 USP4Q13107 963 aa8.42□□□□□ -1.06
BRCA1-224ENST00000497488 ALKBH2Q6NS38 261 aa8.42□□□□□ -1.06
BRCA1-224ENST00000497488 BRICD5Q6PL45 260 aa8.42□□□□□ -1.06
BRCA1-224ENST00000497488 ZBTB33Q86T24 672 aa8.42□□□□□ -1.06
BRCA1-224ENST00000497488 USP48Q86UV5 1035 aa8.42□□□□□ -1.06
BRCA1-224ENST00000497488 TICAM2Q86XR7 235 aa8.42□□□□□ -1.06
BRCA1-224ENST00000497488 EXOC8Q8IYI6 725 aa8.42□□□□□ -1.06
BRCA1-224ENST00000497488 SALL2Q9Y467 1007 aaPredicted RBP8.42□□□□□ -1.06
BRCA1-224ENST00000497488 PNMA6FA0A0J9YX94 578 aa8.41□□□□□ -1.06
BRCA1-224ENST00000497488 ENPP3O14638 875 aa8.41□□□□□ -1.06
BRCA1-224ENST00000497488 CTSHP09668 335 aa8.41□□□□□ -1.06
BRCA1-224ENST00000497488 SAMD7Q7Z3H4 446 aa8.41□□□□□ -1.06
BRCA1-224ENST00000497488 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.41□□□□□ -1.06
BRCA1-224ENST00000497488 PRDM16Q9HAZ2 1276 aa8.41□□□□□ -1.06
BRCA1-224ENST00000497488 SRA1Q9HD15 236 aaKnown RBP8.41□□□□□ -1.06
BRCA1-224ENST00000497488 PCDH12Q9NPG4 1184 aa8.41□□□□□ -1.06
BRCA1-224ENST00000497488 EVA1BQ9NVM1 165 aa8.41□□□□□ -1.06
BRCA1-224ENST00000497488 IFT57Q9NWB7 429 aa8.41□□□□□ -1.06
BRCA1-224ENST00000497488 CCNYL3P0C7X3 344 aa8.4□□□□□ -1.06
BRCA1-224ENST00000497488 PTPN12Q05209 780 aaKnown RBP8.4□□□□□ -1.06
BRCA1-224ENST00000497488 AAMPQ13685 434 aa8.4□□□□□ -1.06
BRCA1-224ENST00000497488 FAM98CQ17RN3 349 aaKnown RBP8.4□□□□□ -1.06
BRCA1-224ENST00000497488 HSP90AB2PQ58FF8 381 aa8.4□□□□□ -1.06
BRCA1-224ENST00000497488 C16orf46Q6P387 395 aa8.4□□□□□ -1.06
BRCA1-224ENST00000497488 FILIP1Q7Z7B0 1213 aa8.4□□□□□ -1.06
BRCA1-224ENST00000497488 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.4□□□□□ -1.06
BRCA1-224ENST00000497488 SAP130Q9H0E3 1048 aa8.4□□□□□ -1.06
BRCA1-224ENST00000497488 CHPF2Q9P2E5 772 aa8.4□□□□□ -1.06
BRCA1-224ENST00000497488 RABGEF1Q9UJ41 708 aa8.4□□□□□ -1.06
BRCA1-224ENST00000497488 BHMG1C9JSJ3 638 aaPredicted RBP8.39□□□□□ -1.07
BRCA1-224ENST00000497488 K7ELQ4 463 aaPredicted RBP8.39□□□□□ -1.07
BRCA1-224ENST00000497488 MAP4K4O95819 1239 aaPredicted RBP8.39□□□□□ -1.07
BRCA1-224ENST00000497488 GJA8P48165 433 aa8.39□□□□□ -1.07
BRCA1-224ENST00000497488 SH3BP5LQ7L8J4 393 aa8.39□□□□□ -1.07
BRCA1-224ENST00000497488 NIF3L1Q9GZT8 377 aa8.39□□□□□ -1.07
BRCA1-224ENST00000497488 ZNF358Q9NW07 568 aa8.39□□□□□ -1.07
BRCA1-224ENST00000497488 FAN1Q9Y2M0 1017 aa8.39□□□□□ -1.07
BRCA1-224ENST00000497488 AK5Q9Y6K8 562 aa8.39□□□□□ -1.07
BRCA1-224ENST00000497488 CCDC180Q9P1Z9 1646 aa8.39□□□□□ -1.07
BRCA1-224ENST00000497488 RNF40O75150 1001 aa8.38□□□□□ -1.07
BRCA1-224ENST00000497488 ATF4P18848 351 aaPredicted RBP8.38□□□□□ -1.07
BRCA1-224ENST00000497488 SERINC3Q13530 473 aa8.38□□□□□ -1.07
BRCA1-224ENST00000497488 PLEKHG6Q3KR16 790 aa8.38□□□□□ -1.07
BRCA1-224ENST00000497488 NBPF6Q5VWK0 638 aa8.38□□□□□ -1.07
BRCA1-224ENST00000497488 NBPF4Q96M43 638 aa8.38□□□□□ -1.07
BRCA1-224ENST00000497488 MAGEC2Q9UBF1 373 aaPredicted RBP8.38□□□□□ -1.07
BRCA1-224ENST00000497488 CCDC194A0A1B0GVG4 234 aa8.37□□□□□ -1.07
BRCA1-224ENST00000497488 ZBTB24O43167 697 aaPredicted RBP8.37□□□□□ -1.07
BRCA1-224ENST00000497488 CKAP2LQ8IYA6 745 aa8.37□□□□□ -1.07
BRCA1-224ENST00000497488 RPUSD2Q8IZ73 545 aaKnown RBP8.37□□□□□ -1.07
BRCA1-224ENST00000497488 FBF1Q8TES7 1133 aa8.37□□□□□ -1.07
BRCA1-224ENST00000497488 SCG3Q8WXD2 468 aaKnown RBP8.37□□□□□ -1.07
BRCA1-224ENST00000497488 FRMD6Q96NE9 622 aa8.37□□□□□ -1.07
BRCA1-224ENST00000497488 CFHR5Q9BXR6 569 aa8.37□□□□□ -1.07
BRCA1-224ENST00000497488 IRF2BPLQ9H1B7 796 aa8.37□□□□□ -1.07
BRCA1-224ENST00000497488 PCDHB11Q9Y5F2 797 aa8.37□□□□□ -1.07
BRCA1-224ENST00000497488 TNFRSF10BO14763 440 aa8.36□□□□□ -1.07
BRCA1-224ENST00000497488 DNAJC6O75061 913 aa8.36□□□□□ -1.07
BRCA1-224ENST00000497488 NBPF20Q3BBV1 942 aa8.36□□□□□ -1.07
BRCA1-224ENST00000497488 HS2ST1Q7LGA3 356 aa8.36□□□□□ -1.07
BRCA1-224ENST00000497488 MORC4Q8TE76 937 aa8.36□□□□□ -1.07
BRCA1-224ENST00000497488 MKL1Q969V6 931 aa8.36□□□□□ -1.07
BRCA1-224ENST00000497488 THAP11Q96EK4 314 aa8.36□□□□□ -1.07
BRCA1-224ENST00000497488 STIM2Q9P246 746 aa8.36□□□□□ -1.07
BRCA1-224ENST00000497488 PEX14O75381 377 aa8.35□□□□□ -1.07
BRCA1-224ENST00000497488 NUDT12Q9BQG2 462 aa8.35□□□□□ -1.07
BRCA1-224ENST00000497488 SPC25Q9HBM1 224 aa8.35□□□□□ -1.07
BRCA1-224ENST00000497488 GJD3Q8N144 294 aa8.34□□□□□ -1.07
BRCA1-224ENST00000497488 RNPC3Q96LT9 517 aaKnown RBP8.34□□□□□ -1.07
BRCA1-224ENST00000497488 CARD14Q9BXL6 1004 aa8.34□□□□□ -1.07
BRCA1-224ENST00000497488 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.34□□□□□ -1.077e-6■■■■■ 74.5
BRCA1-224ENST00000497488 GGT7Q9UJ14 662 aa8.34□□□□□ -1.07
BRCA1-224ENST00000497488 ATAD2Q6PL18 1390 aa8.34□□□□□ -1.07
BRCA1-224ENST00000497488 MZF1P28698 734 aaPredicted RBP8.33□□□□□ -1.08
BRCA1-224ENST00000497488 PAK2Q13177 524 aa8.33□□□□□ -1.08
BRCA1-224ENST00000497488 PLEKHG4Q58EX7 1191 aa8.33□□□□□ -1.08
BRCA1-224ENST00000497488 COX20Q5RI15 118 aa8.33□□□□□ -1.08
BRCA1-224ENST00000497488 RNF166Q96A37 237 aaPredicted RBP8.33□□□□□ -1.08
BRCA1-224ENST00000497488 GPRASP2Q96D09 838 aa8.33□□□□□ -1.08
BRCA1-224ENST00000497488 DDX56Q9NY93 547 aaKnown RBP8.33□□□□□ -1.08
BRCA1-224ENST00000497488 TMEM229AB2RXF0 380 aa8.32□□□□□ -1.08
BRCA1-224ENST00000497488 U2SURPO15042 1029 aaKnown RBP8.32□□□□□ -1.08
BRCA1-224ENST00000497488 DXOO77932 396 aaKnown RBP8.32□□□□□ -1.08
BRCA1-224ENST00000497488 SH3RF1Q7Z6J0 888 aa8.32□□□□□ -1.08
BRCA1-224ENST00000497488 STAG1Q8WVM7 1258 aa8.32□□□□□ -1.08
BRCA1-224ENST00000497488 PRKAB1Q9Y478 270 aa8.32□□□□□ -1.08
BRCA1-224ENST00000497488 MAGEB6P1A0A0J9YX57 407 aa8.31□□□□□ -1.08
BRCA1-224ENST00000497488 EIF4BP23588 611 aaKnown RBP8.31□□□□□ -1.08
BRCA1-224ENST00000497488 SCUBE3Q8IX30 993 aa8.31□□□□□ -1.08
BRCA1-224ENST00000497488 TNS4Q8IZW8 715 aa8.31□□□□□ -1.08
BRCA1-224ENST00000497488 ABTB2Q8N961 1025 aa8.31□□□□□ -1.08
BRCA1-224ENST00000497488 CHMP7Q8WUX9 453 aaPredicted RBP8.31□□□□□ -1.08
BRCA1-224ENST00000497488 CSRNP1Q96S65 589 aa8.31□□□□□ -1.08
BRCA1-224ENST00000497488 PRR14Q9BWN1 585 aa8.31□□□□□ -1.08
BRCA1-224ENST00000497488 BCCIPQ9P287 314 aaKnown RBP eCLIP8.31□□□□□ -1.08
BRCA1-224ENST00000497488 POLIQ9UNA4 740 aa8.31□□□□□ -1.08
BRCA1-224ENST00000497488 SPG7Q9UQ90 795 aa8.31□□□□□ -1.08
BRCA1-224ENST00000497488 PPP1R12AO14974 1030 aaPredicted RBP8.3□□□□□ -1.08
BRCA1-224ENST00000497488 ZBTB39O15060 712 aa8.3□□□□□ -1.08
BRCA1-224ENST00000497488 MYCP01106 439 aaPredicted RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms