RNA–Protein interactions for RNA: ENST00000490663.1

C4A-256, Transcript of complement C4A (Rodgers blood group), human

TSL 2

Gene C4A, Length 524 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C4A-256	ENST00000490663	LMOD3	Q0VAK6	560 aa		24.4	■■□□□ 1.5
C4A-256	ENST00000490663	SGIP1	Q9BQI5	828 aa		24.4	■■□□□ 1.5
C4A-256	ENST00000490663	PPP1R1B	Q9UD71	204 aa	Predicted RBP	24.4	■■□□□ 1.5
C4A-256	ENST00000490663	NUP98	P52948	1817 aa		24.4	■■□□□ 1.5
C4A-256	ENST00000490663	PIP4K2A	P48426	406 aa	Predicted RBP	24.39	■■□□□ 1.49
C4A-256	ENST00000490663	VSIG10	Q8N0Z9	540 aa		24.39	■■□□□ 1.49
C4A-256	ENST00000490663	LAS1L	Q9Y4W2	734 aa	Known RBP	24.39	■■□□□ 1.49
C4A-256	ENST00000490663	CANX	P27824	592 aa	Known RBP	24.38	■■□□□ 1.49
C4A-256	ENST00000490663	FLAD1	Q8NFF5	587 aa		24.38	■■□□□ 1.49
C4A-256	ENST00000490663	SLC16A10	Q8TF71	515 aa		24.38	■■□□□ 1.49
C4A-256	ENST00000490663	ARHGEF1	Q92888	912 aa	Known RBP	24.38	■■□□□ 1.49
C4A-256	ENST00000490663	N4BP2	Q86UW6	1770 aa	Predicted RBP	24.37	■■□□□ 1.49
C4A-256	ENST00000490663	SRP68	Q9UHB9	627 aa	Known RBP	24.37	■■□□□ 1.49
C4A-256	ENST00000490663	TSPYL4	Q9UJ04	414 aa		24.37	■■□□□ 1.49
C4A-256	ENST00000490663	SOS1	Q07889	1333 aa	Predicted RBP	24.36	■■□□□ 1.49
C4A-256	ENST00000490663	KIF13B	Q9NQT8	1826 aa		24.36	■■□□□ 1.49
C4A-256	ENST00000490663	HMGB2	P26583	209 aa	Known RBP	24.36	■■□□□ 1.49
C4A-256	ENST00000490663	TRAPPC3L	Q5T215	181 aa		24.36	■■□□□ 1.49
C4A-256	ENST00000490663	USP16	Q9Y5T5	823 aa		24.36	■■□□□ 1.49
C4A-256	ENST00000490663	COL15A1	P39059	1388 aa		24.36	■■□□□ 1.49
C4A-256	ENST00000490663	A1BG	P04217	495 aa		24.35	■■□□□ 1.49
C4A-256	ENST00000490663	DIEXF	Q68CQ4	756 aa	Known RBP	24.35	■■□□□ 1.49
C4A-256	ENST00000490663	ZNF330	Q9Y3S2	320 aa	Predicted RBP	24.35	■■□□□ 1.49
C4A-256	ENST00000490663	SALL2	Q9Y467	1007 aa	Predicted RBP	24.35	■■□□□ 1.49
C4A-256	ENST00000490663	EIF4A1	P60842	406 aa	Known RBP	24.34	■■□□□ 1.49
C4A-256	ENST00000490663	KLHL34	Q8N239	644 aa		24.34	■■□□□ 1.49
C4A-256	ENST00000490663	KIAA1551	Q9HCM1	1747 aa		24.33	■■□□□ 1.49
C4A-256	ENST00000490663	STARD3NL	O95772	234 aa		24.33	■■□□□ 1.49
C4A-256	ENST00000490663	SNRPA1	P09661	255 aa	Known RBP	24.32	■■□□□ 1.48
C4A-256	ENST00000490663	RFC4	P35249	363 aa		24.32	■■□□□ 1.48
C4A-256	ENST00000490663	KRT24	Q2M2I5	525 aa		24.32	■■□□□ 1.48
C4A-256	ENST00000490663	POLD1	P28340	1107 aa		24.31	■■□□□ 1.48
C4A-256	ENST00000490663	CACNA1S	Q13698	1873 aa		24.31	■■□□□ 1.48
C4A-256	ENST00000490663	ARX	Q96QS3	562 aa		24.31	■■□□□ 1.48
C4A-256	ENST00000490663	ANKRD36C	Q5JPF3	1778 aa		24.3	■■□□□ 1.48
C4A-256	ENST00000490663	ADRA2B	P18089	450 aa		24.3	■■□□□ 1.48
C4A-256	ENST00000490663	TEX13A	Q9BXU3	409 aa	Predicted RBP	24.3	■■□□□ 1.48
C4A-256	ENST00000490663	USP42	Q9H9J4	1324 aa	Known RBP	24.3	■■□□□ 1.48
C4A-256	ENST00000490663	GYS1	P13807	737 aa		24.29	■■□□□ 1.48
C4A-256	ENST00000490663	FHDC1	Q9C0D6	1143 aa	Predicted RBP	24.29	■■□□□ 1.48
C4A-256	ENST00000490663	GIGYF1	O75420	1035 aa	Predicted RBP	24.28	■■□□□ 1.48
C4A-256	ENST00000490663	BRCA1	P38398	1863 aa	Known RBP	24.28	■■□□□ 1.48
C4A-256	ENST00000490663	ANKRD31	Q8N7Z5	1873 aa		24.28	■■□□□ 1.48
C4A-256	ENST00000490663	NRXN2	Q9P2S2	1712 aa		24.27	■■□□□ 1.48
C4A-256	ENST00000490663	USPL1	Q5W0Q7	1092 aa		24.27	■■□□□ 1.48
C4A-256	ENST00000490663	MIER1	Q8N108	512 aa		24.27	■■□□□ 1.48
C4A-256	ENST00000490663	NBPF26	B4DH59	902 aa		24.26	■■□□□ 1.47
C4A-256	ENST00000490663	CHL1	O00533	1208 aa		24.26	■■□□□ 1.47
C4A-256	ENST00000490663	EIF5	P55010	431 aa	Known RBP	24.26	■■□□□ 1.47
C4A-256	ENST00000490663	FKBP8	Q14318	412 aa		24.26	■■□□□ 1.47
C4A-256	ENST00000490663	NBPF10	Q6P3W6	841 aa	Known RBP	24.26	■■□□□ 1.47
C4A-256	ENST00000490663	NBPF15	Q8N660	670 aa		24.26	■■□□□ 1.47
C4A-256	ENST00000490663	MMP10	P09238	476 aa		24.25	■■□□□ 1.47
C4A-256	ENST00000490663	NECTIN2	Q92692	538 aa		24.25	■■□□□ 1.47
C4A-256	ENST00000490663	MBIP	Q9NS73	344 aa		24.25	■■□□□ 1.47
C4A-256	ENST00000490663	TBC1D2B	Q9UPU7	963 aa		24.25	■■□□□ 1.47
C4A-256	ENST00000490663	ZPR1	O75312	459 aa		24.23	■■□□□ 1.47
C4A-256	ENST00000490663	EIF2S2	P20042	333 aa	Known RBP	24.23	■■□□□ 1.47
C4A-256	ENST00000490663	IL6ST	P40189	918 aa	Predicted RBP	24.23	■■□□□ 1.47
C4A-256	ENST00000490663	ARFGEF2	Q9Y6D5	1785 aa		24.23	■■□□□ 1.47
C4A-256	ENST00000490663	CACNA1F	O60840	1977 aa		24.22	■■□□□ 1.47
C4A-256	ENST00000490663	ZNF853	P0CG23	659 aa		24.22	■■□□□ 1.47
C4A-256	ENST00000490663	WWC1	Q8IX03	1113 aa		24.22	■■□□□ 1.47
C4A-256	ENST00000490663	NGEF	Q8N5V2	710 aa		24.22	■■□□□ 1.47
C4A-256	ENST00000490663	CFAP44	Q96MT7	982 aa		24.22	■■□□□ 1.47
C4A-256	ENST00000490663	BCL2L12	Q9HB09	334 aa		24.22	■■□□□ 1.47
C4A-256	ENST00000490663	BABAM1	Q9NWV8	329 aa		24.22	■■□□□ 1.47
C4A-256	ENST00000490663	NARF	Q9UHQ1	456 aa		24.22	■■□□□ 1.47
C4A-256	ENST00000490663	CCER2	I3L3R5	266 aa		24.21	■■□□□ 1.47
C4A-256	ENST00000490663	NLGN2	Q8NFZ4	835 aa		24.21	■■□□□ 1.47
C4A-256	ENST00000490663	TSR2	Q969E8	191 aa	Known RBP	24.21	■■□□□ 1.47
C4A-256	ENST00000490663	DLEC1	Q9Y238	1755 aa		24.21	■■□□□ 1.47
C4A-256	ENST00000490663	CHD4	Q14839	1912 aa		24.2	■■□□□ 1.46
C4A-256	ENST00000490663	ANXA1	P04083	346 aa		24.2	■■□□□ 1.46
C4A-256	ENST00000490663	MYL6B	P14649	208 aa		24.2	■■□□□ 1.46
C4A-256	ENST00000490663	DDR1	Q08345	913 aa		24.2	■■□□□ 1.46
C4A-256	ENST00000490663	SYT17	Q9BSW7	474 aa		24.2	■■□□□ 1.46
C4A-256	ENST00000490663	IFT57	Q9NWB7	429 aa		24.2	■■□□□ 1.46
C4A-256	ENST00000490663	COL11A2	P13942	1736 aa	Predicted RBP	24.19	■■□□□ 1.46
C4A-256	ENST00000490663	GNAI1	P63096	354 aa		24.19	■■□□□ 1.46
C4A-256	ENST00000490663	NLGN1	Q8N2Q7	840 aa		24.19	■■□□□ 1.46
C4A-256	ENST00000490663	CCDC27	Q2M243	656 aa		24.18	■■□□□ 1.46
C4A-256	ENST00000490663	BICDL1	Q6ZP65	573 aa		24.18	■■□□□ 1.46
C4A-256	ENST00000490663	DZIP3	Q86Y13	1208 aa	Known RBP	24.18	■■□□□ 1.46
C4A-256	ENST00000490663		A0A087WZG4	1122 aa		24.17	■■□□□ 1.46
C4A-256	ENST00000490663	CALD1	Q05682	793 aa	Known RBP	24.17	■■□□□ 1.46
C4A-256	ENST00000490663	PROSER3	Q2NL68	480 aa		24.17	■■□□□ 1.46
C4A-256	ENST00000490663	ELL2	O00472	640 aa	Predicted RBP	24.16	■■□□□ 1.46
C4A-256	ENST00000490663	CAMTA2	O94983	1202 aa		24.16	■■□□□ 1.46
C4A-256	ENST00000490663	NPM2	Q86SE8	214 aa	Known RBP	24.16	■■□□□ 1.46
C4A-256	ENST00000490663	NFIX	Q14938	502 aa		24.15	■■□□□ 1.46
C4A-256	ENST00000490663	PARP3	Q9Y6F1	533 aa		24.15	■■□□□ 1.46
C4A-256	ENST00000490663	C10orf71	Q711Q0	1435 aa		24.15	■■□□□ 1.46
C4A-256	ENST00000490663	DUSP27	Q5VZP5	1158 aa		24.14	■■□□□ 1.45
C4A-256	ENST00000490663	TBC1D9B	Q66K14	1250 aa		24.14	■■□□□ 1.45
C4A-256	ENST00000490663	TTLL7	Q6ZT98	887 aa		24.14	■■□□□ 1.45
C4A-256	ENST00000490663	WWC3	Q9ULE0	1092 aa		24.14	■■□□□ 1.45
C4A-256	ENST00000490663	ARFGEF1	Q9Y6D6	1849 aa		24.13	■■□□□ 1.45
C4A-256	ENST00000490663	C8orf58	Q8NAV2	365 aa		24.13	■■□□□ 1.45
C4A-256	ENST00000490663	LAMB2	P55268	1798 aa		24.13	■■□□□ 1.45

Retrieved 100 of 20,778 RNA–protein pairs in 133 ms