RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 MMP10P09238 476 aa24■■□□□ 1.43
COL9A3-214ENST00000490398 CANXP27824 592 aaKnown RBP24■■□□□ 1.43
COL9A3-214ENST00000490398 FMNL2Q96PY5 1086 aa24■■□□□ 1.43
COL9A3-214ENST00000490398 RRP7AQ9Y3A4 280 aaKnown RBP24■■□□□ 1.43
COL9A3-214ENST00000490398 TAF7Q15545 349 aaPredicted RBP23.99■■□□□ 1.43
COL9A3-214ENST00000490398 PNNQ9H307 717 aaKnown RBP23.99■■□□□ 1.43
COL9A3-214ENST00000490398 USP42Q9H9J4 1324 aaKnown RBP23.99■■□□□ 1.43
COL9A3-214ENST00000490398 FKBP8Q14318 412 aa23.98■■□□□ 1.43
COL9A3-214ENST00000490398 USP16Q9Y5T5 823 aa23.98■■□□□ 1.43
COL9A3-214ENST00000490398 A1BGP04217 495 aa23.97■■□□□ 1.43
COL9A3-214ENST00000490398 TMPOP42166 694 aaKnown RBP23.97■■□□□ 1.43
COL9A3-214ENST00000490398 RIPK4P57078 832 aa23.97■■□□□ 1.43
COL9A3-214ENST00000490398 WDR43Q15061 677 aaKnown RBP eCLIP23.97■■□□□ 1.43
COL9A3-214ENST00000490398 NLGN1Q8N2Q7 840 aa23.97■■□□□ 1.43
COL9A3-214ENST00000490398 COL15A1P39059 1388 aa23.96■■□□□ 1.43
COL9A3-214ENST00000490398 STARD3NLO95772 234 aa23.96■■□□□ 1.43
COL9A3-214ENST00000490398 USPL1Q5W0Q7 1092 aa23.96■■□□□ 1.43
COL9A3-214ENST00000490398 PIP4K2AP48426 406 aaPredicted RBP23.95■■□□□ 1.42
COL9A3-214ENST00000490398 BCL2L12Q9HB09 334 aa23.95■■□□□ 1.42
COL9A3-214ENST00000490398 EIF5P55010 431 aaKnown RBP23.94■■□□□ 1.42
COL9A3-214ENST00000490398 CD2APQ9Y5K6 639 aa23.94■■□□□ 1.42
COL9A3-214ENST00000490398 DDR1Q08345 913 aa23.93■■□□□ 1.42
COL9A3-214ENST00000490398 NEUROD2Q15784 382 aa23.93■■□□□ 1.42
COL9A3-214ENST00000490398 RUNDC1Q96C34 613 aa23.93■■□□□ 1.42
COL9A3-214ENST00000490398 TEX13AQ9BXU3 409 aaPredicted RBP23.93■■□□□ 1.42
COL9A3-214ENST00000490398 NARFQ9UHQ1 456 aa23.92■■□□□ 1.42
COL9A3-214ENST00000490398 PELP1Q8IZL8 1130 aaKnown RBP23.91■■□□□ 1.42
COL9A3-214ENST00000490398 WWC3Q9ULE0 1092 aa23.91■■□□□ 1.42
COL9A3-214ENST00000490398 DCAF8L1A6NGE4 600 aa23.9■■□□□ 1.42
COL9A3-214ENST00000490398 ZPR1O75312 459 aa23.9■■□□□ 1.42
COL9A3-214ENST00000490398 SNRPA1P09661 255 aaKnown RBP23.9■■□□□ 1.42
COL9A3-214ENST00000490398 YBX3P16989 372 aaKnown RBP eCLIP23.9■■□□□ 1.42
COL9A3-214ENST00000490398 TM4SF1P30408 202 aa23.9■■□□□ 1.42
COL9A3-214ENST00000490398 TRIM35Q9UPQ4 493 aa23.9■■□□□ 1.42
COL9A3-214ENST00000490398 ZNF330Q9Y3S2 320 aaPredicted RBP23.9■■□□□ 1.42
COL9A3-214ENST00000490398 GPR162Q16538 588 aa23.89■■□□□ 1.41
COL9A3-214ENST00000490398 TBC1D2BQ9UPU7 963 aa23.89■■□□□ 1.41
COL9A3-214ENST00000490398 KDM3BQ7LBC6 1761 aa23.88■■□□□ 1.41
COL9A3-214ENST00000490398 NBPF26B4DH59 902 aa23.88■■□□□ 1.41
COL9A3-214ENST00000490398 IL6STP40189 918 aaPredicted RBP23.88■■□□□ 1.41
COL9A3-214ENST00000490398 EIF4A1P60842 406 aaKnown RBP23.88■■□□□ 1.41
COL9A3-214ENST00000490398 NBPF10Q6P3W6 841 aaKnown RBP23.88■■□□□ 1.41
COL9A3-214ENST00000490398 NBPF15Q8N660 670 aa23.88■■□□□ 1.41
COL9A3-214ENST00000490398 PARP3Q9Y6F1 533 aa23.88■■□□□ 1.41
COL9A3-214ENST00000490398 POLRMTO00411 1230 aaKnown RBP23.87■■□□□ 1.41
COL9A3-214ENST00000490398 PNISRQ8TF01 805 aaKnown RBP23.87■■□□□ 1.41
COL9A3-214ENST00000490398 C10orf71Q711Q0 1435 aa23.86■■□□□ 1.41
COL9A3-214ENST00000490398 NFIXQ14938 502 aa23.86■■□□□ 1.41
COL9A3-214ENST00000490398 GIGYF1O75420 1035 aaPredicted RBP23.85■■□□□ 1.41
COL9A3-214ENST00000490398 TSPYL4Q9UJ04 414 aa23.85■■□□□ 1.41
COL9A3-214ENST00000490398 PXDNLA1KZ92 1463 aa23.84■■□□□ 1.41
COL9A3-214ENST00000490398 SENP3-EIF4A1A0A087X0R7 540 aa23.84■■□□□ 1.41
COL9A3-214ENST00000490398 A0A087WZG4 1122 aa23.83■■□□□ 1.41
COL9A3-214ENST00000490398 APAF1O14727 1248 aa23.83■■□□□ 1.41
COL9A3-214ENST00000490398 KIAA1551Q9HCM1 1747 aa23.83■■□□□ 1.41
COL9A3-214ENST00000490398 A0A0G2JLW4 131 aa23.82■■□□□ 1.4
COL9A3-214ENST00000490398 ANP32CO43423 234 aa23.82■■□□□ 1.4
COL9A3-214ENST00000490398 CAMTA2O94983 1202 aa23.82■■□□□ 1.4
COL9A3-214ENST00000490398 YY1P25490 414 aa23.82■■□□□ 1.4
COL9A3-214ENST00000490398 LMOD3Q0VAK6 560 aa23.82■■□□□ 1.4
COL9A3-214ENST00000490398 BICDL1Q6ZP65 573 aa23.82■■□□□ 1.4
COL9A3-214ENST00000490398 TBC1D9BQ66K14 1250 aa23.81■■□□□ 1.4
COL9A3-214ENST00000490398 KIF13BQ9NQT8 1826 aa23.8■■□□□ 1.4
COL9A3-214ENST00000490398 DPEP1P16444 411 aa23.8■■□□□ 1.4
COL9A3-214ENST00000490398 DZIP3Q86Y13 1208 aaKnown RBP23.8■■□□□ 1.4
COL9A3-214ENST00000490398 KRT24Q2M2I5 525 aa23.79■■□□□ 1.4
COL9A3-214ENST00000490398 SCN7AQ01118 1682 aa23.79■■□□□ 1.4
COL9A3-214ENST00000490398 CHL1O00533 1208 aa23.78■■□□□ 1.4
COL9A3-214ENST00000490398 SERPINB2P05120 415 aa23.78■■□□□ 1.4
COL9A3-214ENST00000490398 MRS2Q9HD23 443 aa23.78■■□□□ 1.4
COL9A3-214ENST00000490398 LAS1LQ9Y4W2 734 aaKnown RBP23.78■■□□□ 1.4
COL9A3-214ENST00000490398 KCNA3P22001 575 aa23.77■■□□□ 1.4
COL9A3-214ENST00000490398 TGFB2P61812 414 aa23.77■■□□□ 1.4
COL9A3-214ENST00000490398 LAMB4A4D0S4 1761 aa23.77■■□□□ 1.4
COL9A3-214ENST00000490398 N4BP2Q86UW6 1770 aaPredicted RBP23.77■■□□□ 1.4
COL9A3-214ENST00000490398 CARMIL3Q8ND23 1372 aa23.77■■□□□ 1.4
COL9A3-214ENST00000490398 NGEFQ8N5V2 710 aa23.76■■□□□ 1.39
COL9A3-214ENST00000490398 BABAM1Q9NWV8 329 aa23.76■■□□□ 1.39
COL9A3-214ENST00000490398 CHRNA5P30532 468 aa23.75■■□□□ 1.39
COL9A3-214ENST00000490398 CCDC24Q8N4L8 307 aa23.75■■□□□ 1.39
COL9A3-214ENST00000490398 MYL6BP14649 208 aa23.74■■□□□ 1.39
COL9A3-214ENST00000490398 AFDNP55196 1824 aaKnown RBP23.74■■□□□ 1.39
COL9A3-214ENST00000490398 NRXN2Q9P2S2 1712 aa23.73■■□□□ 1.39
COL9A3-214ENST00000490398 HLFQ16534 295 aa23.73■■□□□ 1.39
COL9A3-214ENST00000490398 TTLL7Q6ZT98 887 aa23.73■■□□□ 1.39
COL9A3-214ENST00000490398 NPM2Q86SE8 214 aaKnown RBP23.73■■□□□ 1.39
COL9A3-214ENST00000490398 BCORQ6W2J9 1755 aa23.73■■□□□ 1.39
COL9A3-214ENST00000490398 GRIN3BO60391 1043 aa23.72■■□□□ 1.39
COL9A3-214ENST00000490398 ANXA1P04083 346 aa23.72■■□□□ 1.39
COL9A3-214ENST00000490398 EIF2S2P20042 333 aaKnown RBP23.72■■□□□ 1.39
COL9A3-214ENST00000490398 PDIA6Q15084 440 aa23.72■■□□□ 1.39
COL9A3-214ENST00000490398 PROSER3Q2NL68 480 aa23.72■■□□□ 1.39
COL9A3-214ENST00000490398 LRP10Q7Z4F1 713 aa23.71■■□□□ 1.39
COL9A3-214ENST00000490398 NECTIN2Q92692 538 aa23.71■■□□□ 1.39
COL9A3-214ENST00000490398 ZNF853P0CG23 659 aa23.7■■□□□ 1.38
COL9A3-214ENST00000490398 PRR5LQ6MZQ0 368 aa23.7■■□□□ 1.38
COL9A3-214ENST00000490398 MBIPQ9NS73 344 aa23.7■■□□□ 1.38
COL9A3-214ENST00000490398 BCS1LQ9Y276 419 aa23.7■■□□□ 1.38
COL9A3-214ENST00000490398 CFAP44Q96MT7 982 aa23.69■■□□□ 1.38
COL9A3-214ENST00000490398 SETDB2Q96T68 719 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms