RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 NUTM1Q86Y26 1132 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 N4BP2L2Q92802 583 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-228ENST00000490135 TSNARE1Q96NA8 513 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 SOGA1O94964 1423 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 ZNF445P59923 1031 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 CCDC148Q8NFR7 591 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 ARFGAP3Q9NP61 516 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 MAGEA9P43362 315 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 EIF5P55010 431 aaKnown RBP8.38□□□□□ -1.07
SYNE1-228ENST00000490135 GAS2L3Q86XJ1 694 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 MRFAP1Q9Y605 127 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 MRPS9P82933 396 aaKnown RBP8.38□□□□□ -1.07
SYNE1-228ENST00000490135 C20orf194Q5TEA3 1177 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 MMS22LQ6ZRQ5 1243 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 CCDC150Q8NCX0 1101 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 RAB3IL1Q8TBN0 382 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 EVC2Q86UK5 1308 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 INPP5BP32019 993 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 ARHGAP29Q52LW3 1261 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 CCDC158Q5M9N0 1113 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 CASTP20810 708 aaKnown RBP8.38□□□□□ -1.07
SYNE1-228ENST00000490135 PSMD2Q13200 908 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 DNAJC21Q5F1R6 531 aaKnown RBP8.38□□□□□ -1.07
SYNE1-228ENST00000490135 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.38□□□□□ -1.07
SYNE1-228ENST00000490135 EFCAB13Q8IY85 973 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 TCHPQ9BT92 498 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 CNNM1Q9NRU3 951 aa8.38□□□□□ -1.07
SYNE1-228ENST00000490135 CHMP4BP1P59074 171 aa8.37□□□□□ -1.07
SYNE1-228ENST00000490135 ZSCAN29Q8IWY8 852 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-228ENST00000490135 OTUD6BQ8N6M0 293 aa8.37□□□□□ -1.07
SYNE1-228ENST00000490135 TNMDQ9H2S6 317 aa8.37□□□□□ -1.07
SYNE1-228ENST00000490135 DIAPH1O60610 1272 aaKnown RBP8.37□□□□□ -1.07
SYNE1-228ENST00000490135 NEDD9Q14511 834 aa8.37□□□□□ -1.07
SYNE1-228ENST00000490135 LARP1Q6PKG0 1096 aaKnown RBP8.37□□□□□ -1.07
SYNE1-228ENST00000490135 ANKRD30AQ9BXX3 1397 aa8.37□□□□□ -1.07
SYNE1-228ENST00000490135 GYS2P54840 703 aa8.37□□□□□ -1.07
SYNE1-228ENST00000490135 CEBPZQ03701 1054 aaKnown RBP8.37□□□□□ -1.07
SYNE1-228ENST00000490135 C6orf163Q5TEZ5 329 aa8.37□□□□□ -1.07
SYNE1-228ENST00000490135 PDRG1Q9NUG6 133 aa8.37□□□□□ -1.07
SYNE1-228ENST00000490135 CCDC50Q8IVM0 306 aa8.37□□□□□ -1.07
SYNE1-228ENST00000490135 CRACR2AQ9BSW2 395 aa8.37□□□□□ -1.07
SYNE1-228ENST00000490135 FIBPO43427 364 aa8.36□□□□□ -1.07
SYNE1-228ENST00000490135 CHRM1P11229 460 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-228ENST00000490135 ATF3P18847 181 aa8.36□□□□□ -1.07
SYNE1-228ENST00000490135 POLD1P28340 1107 aa8.36□□□□□ -1.07
SYNE1-228ENST00000490135 IFFO1Q0D2I5 559 aa8.36□□□□□ -1.07
SYNE1-228ENST00000490135 JARID2Q92833 1246 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-228ENST00000490135 HSPA4P34932 840 aa8.36□□□□□ -1.07
SYNE1-228ENST00000490135 MSL1Q68DK7 614 aa8.36□□□□□ -1.07
SYNE1-228ENST00000490135 EGFL6Q8IUX8 553 aa8.36□□□□□ -1.07
SYNE1-228ENST00000490135 PRPF38AQ8NAV1 312 aaKnown RBP8.36□□□□□ -1.07
SYNE1-228ENST00000490135 CTNNBL1Q8WYA6 563 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-228ENST00000490135 FERMT2Q96AC1 680 aa8.36□□□□□ -1.07
SYNE1-228ENST00000490135 CTNNA2P26232 953 aa8.36□□□□□ -1.07
SYNE1-228ENST00000490135 DAAM2Q86T65 1068 aa8.36□□□□□ -1.07
SYNE1-228ENST00000490135 FERMT1Q9BQL6 677 aa8.36□□□□□ -1.07
SYNE1-228ENST00000490135 NLRP2Q9NX02 1062 aa8.36□□□□□ -1.07
SYNE1-228ENST00000490135 FAM210AQ96ND0 272 aa8.36□□□□□ -1.07
SYNE1-228ENST00000490135 MAP9Q49MG5 647 aa8.35□□□□□ -1.07
SYNE1-228ENST00000490135 CEP57L1Q8IYX8 460 aa8.35□□□□□ -1.07
SYNE1-228ENST00000490135 JPH2Q9BR39 696 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-228ENST00000490135 TMOD2Q9NZR1 351 aa8.35□□□□□ -1.07
SYNE1-228ENST00000490135 DDX41Q9UJV9 622 aaKnown RBP8.35□□□□□ -1.07
SYNE1-228ENST00000490135 WDR33Q9C0J8 1336 aaKnown RBP8.35□□□□□ -1.07
SYNE1-228ENST00000490135 RANBP1P43487 201 aa8.35□□□□□ -1.07
SYNE1-228ENST00000490135 IMMTQ16891 758 aaKnown RBP8.35□□□□□ -1.07
SYNE1-228ENST00000490135 PTGS1P23219 599 aa8.35□□□□□ -1.07
SYNE1-228ENST00000490135 GNAI1P63096 354 aa8.35□□□□□ -1.07
SYNE1-228ENST00000490135 VPS36Q86VN1 386 aa8.35□□□□□ -1.07
SYNE1-228ENST00000490135 ME1P48163 572 aa8.35□□□□□ -1.07
SYNE1-228ENST00000490135 MCM2P49736 904 aa8.35□□□□□ -1.07
SYNE1-228ENST00000490135 SPA17Q15506 151 aa8.35□□□□□ -1.07
SYNE1-228ENST00000490135 PNISRQ8TF01 805 aaKnown RBP8.35□□□□□ -1.07
SYNE1-228ENST00000490135 CCDC114Q96M63 670 aa8.35□□□□□ -1.07
SYNE1-228ENST00000490135 RBM42Q9BTD8 480 aaKnown RBP8.35□□□□□ -1.07
SYNE1-228ENST00000490135 LNPKQ9C0E8 428 aa8.35□□□□□ -1.07
SYNE1-228ENST00000490135 UACAQ9BZF9 1416 aa8.35□□□□□ -1.07
SYNE1-228ENST00000490135 LRRC45Q96CN5 670 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 CARD10Q9BWT7 1032 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 MORC2Q9Y6X9 1032 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-228ENST00000490135 BUB1BO60566 1050 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-228ENST00000490135 CDKL5O76039 1030 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 MCM6Q14566 821 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 LRRC23Q53EV4 343 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-228ENST00000490135 SMC5Q8IY18 1101 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 L3MBTL2Q969R5 705 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 NUP62CLQ9H1M0 184 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 CCDC178Q5BJE1 867 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 ZSCAN25Q6NSZ9 544 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 FAM114A1Q8IWE2 563 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 SREK1Q8WXA9 508 aaKnown RBP8.34□□□□□ -1.07
SYNE1-228ENST00000490135 CARMIL2Q6F5E8 1435 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 PEG3Q9GZU2 1588 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 MCM3P25205 808 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 MAP3K11Q16584 847 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 CCDC186Q7Z3E2 898 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 MACROD2A1Z1Q3 448 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 HCLS1P14317 486 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-228ENST00000490135 KIF5BP33176 963 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 ANKRD1Q15327 319 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms