RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CSB-PGBD3P0DP91 1061 aa11.57□□□□□ -0.56
USP40-213ENST00000483216 IGFBP4P22692 258 aa11.57□□□□□ -0.56
USP40-213ENST00000483216 WEE1P30291 646 aa11.57□□□□□ -0.56
USP40-213ENST00000483216 NOS2P35228 1153 aa11.57□□□□□ -0.56
USP40-213ENST00000483216 SCG3Q8WXD2 468 aaKnown RBP11.57□□□□□ -0.56
USP40-213ENST00000483216 SERTM1A2A2V5 107 aa11.56□□□□□ -0.56
USP40-213ENST00000483216 F11P03951 625 aa11.56□□□□□ -0.56
USP40-213ENST00000483216 ITGA6P23229 1130 aa11.56□□□□□ -0.56
USP40-213ENST00000483216 L3MBTL2Q969R5 705 aa11.56□□□□□ -0.56
USP40-213ENST00000483216 ZNF775Q96BV0 537 aaPredicted RBP11.56□□□□□ -0.56
USP40-213ENST00000483216 CHMP3Q9Y3E7 222 aa11.56□□□□□ -0.56
USP40-213ENST00000483216 H3BM21 787 aa11.55□□□□□ -0.56
USP40-213ENST00000483216 PPP1R12BO60237 982 aaPredicted RBP11.55□□□□□ -0.56
USP40-213ENST00000483216 HIRAP54198 1017 aaPredicted RBP11.55□□□□□ -0.56
USP40-213ENST00000483216 C1orf216Q8TAB5 229 aa11.55□□□□□ -0.56
USP40-213ENST00000483216 CLP1Q92989 425 aaKnown RBP11.55□□□□□ -0.56
USP40-213ENST00000483216 ZDHHC3Q9NYG2 299 aa11.55□□□□□ -0.56
USP40-213ENST00000483216 TMEM88BA6NKF7 163 aa11.54□□□□□ -0.56
USP40-213ENST00000483216 EML1O00423 815 aa11.54□□□□□ -0.56
USP40-213ENST00000483216 LGR5O75473 907 aa11.54□□□□□ -0.56
USP40-213ENST00000483216 NBPF1Q3BBV0 1214 aa11.54□□□□□ -0.56
USP40-213ENST00000483216 GAS2L1Q99501 681 aaPredicted RBP11.54□□□□□ -0.56
USP40-213ENST00000483216 C2orf49Q9BVC5 232 aaPredicted RBP11.54□□□□□ -0.56
USP40-213ENST00000483216 PARP3Q9Y6F1 533 aa11.54□□□□□ -0.56
USP40-213ENST00000483216 MSX1P28360 303 aa11.53□□□□□ -0.56
USP40-213ENST00000483216 AIDAQ96BJ3 306 aa11.53□□□□□ -0.56
USP40-213ENST00000483216 GMCL1Q96IK5 515 aa11.53□□□□□ -0.56
USP40-213ENST00000483216 ZNF232Q9UNY5 417 aa11.53□□□□□ -0.56
USP40-213ENST00000483216 FOXO3O43524 673 aa11.52□□□□□ -0.57
USP40-213ENST00000483216 VEGFBP49765 207 aa11.52□□□□□ -0.57
USP40-213ENST00000483216 SLC16A10Q8TF71 515 aa11.52□□□□□ -0.57
USP40-213ENST00000483216 NANOS1Q8WY41 292 aaKnown RBP11.52□□□□□ -0.57
USP40-213ENST00000483216 USTQ9Y2C2 406 aa11.52□□□□□ -0.57
USP40-213ENST00000483216 H7C1W4 665 aa11.51□□□□□ -0.57
USP40-213ENST00000483216 ATP4AP20648 1035 aa11.51□□□□□ -0.57
USP40-213ENST00000483216 NFX1Q12986 1120 aaKnown RBP11.51□□□□□ -0.57
USP40-213ENST00000483216 OCLNQ16625 522 aa11.51□□□□□ -0.57
USP40-213ENST00000483216 SH3PXD2AQ5TCZ1 1133 aa11.51□□□□□ -0.57
USP40-213ENST00000483216 TRIM22Q8IYM9 498 aa11.51□□□□□ -0.57
USP40-213ENST00000483216 CHMP7Q8WUX9 453 aaPredicted RBP11.51□□□□□ -0.57
USP40-213ENST00000483216 PRMT3O60678 531 aa11.5□□□□□ -0.57
USP40-213ENST00000483216 TATP17735 454 aaPredicted RBP11.5□□□□□ -0.57
USP40-213ENST00000483216 C1orf53Q5VUE5 145 aa11.5□□□□□ -0.57
USP40-213ENST00000483216 RIPOR1Q6ZS17 1223 aa11.5□□□□□ -0.57
USP40-213ENST00000483216 PRIMPOLQ96LW4 560 aa11.5□□□□□ -0.57
USP40-213ENST00000483216 CRISPLD1Q9H336 500 aa11.5□□□□□ -0.57
USP40-213ENST00000483216 GPAMQ9HCL2 828 aa11.5□□□□□ -0.57
USP40-213ENST00000483216 CUEDC1Q9NWM3 386 aaPredicted RBP11.5□□□□□ -0.57
USP40-213ENST00000483216 VSIG8P0DPA2 414 aa11.49□□□□□ -0.57
USP40-213ENST00000483216 TXLNAP40222 546 aa11.49□□□□□ -0.57
USP40-213ENST00000483216 LBRQ14739 615 aaKnown RBP11.49□□□□□ -0.57
USP40-213ENST00000483216 SLAIN2Q9P270 581 aa11.49□□□□□ -0.57
USP40-213ENST00000483216 DBN1Q16643 649 aa11.48□□□□□ -0.57
USP40-213ENST00000483216 PGBD3Q8N328 593 aa11.48□□□□□ -0.57
USP40-213ENST00000483216 CXXC1Q9P0U4 656 aaPredicted RBP11.48□□□□□ -0.57
USP40-213ENST00000483216 GPC6Q9Y625 555 aaPredicted RBP11.48□□□□□ -0.57
USP40-213ENST00000483216 RETREG2Q8NC44 543 aa11.47□□□□□ -0.57
USP40-213ENST00000483216 C7orf43Q8WVR3 580 aa11.47□□□□□ -0.57
USP40-213ENST00000483216 RUBCNLQ9H714 662 aa11.47□□□□□ -0.57
USP40-213ENST00000483216 HCN4Q9Y3Q4 1203 aa11.47□□□□□ -0.57
USP40-213ENST00000483216 PDE4CQ08493 712 aa11.46□□□□□ -0.57
USP40-213ENST00000483216 FKBP5Q13451 457 aaPredicted RBP11.46□□□□□ -0.57
USP40-213ENST00000483216 TREML4Q6UXN2 200 aa11.46□□□□□ -0.57
USP40-213ENST00000483216 SV2AQ7L0J3 742 aa11.46□□□□□ -0.57
USP40-213ENST00000483216 VWA5B2Q8N398 1253 aa11.46□□□□□ -0.57
USP40-213ENST00000483216 IRF7Q92985 503 aa11.46□□□□□ -0.57
USP40-213ENST00000483216 ZNF837Q96EG3 531 aaPredicted RBP11.46□□□□□ -0.57
USP40-213ENST00000483216 ZIC5Q96T25 663 aa11.46□□□□□ -0.57
USP40-213ENST00000483216 PHACTR1Q9C0D0 580 aa11.46□□□□□ -0.57
USP40-213ENST00000483216 NUCKS1Q9H1E3 243 aaKnown RBP11.46□□□□□ -0.57
USP40-213ENST00000483216 WFS1O76024 890 aa11.45□□□□□ -0.58
USP40-213ENST00000483216 ALDH16A1Q8IZ83 802 aa11.45□□□□□ -0.58
USP40-213ENST00000483216 CDC14CA4D256 554 aa11.44□□□□□ -0.58
USP40-213ENST00000483216 THBS1P07996 1170 aa11.44□□□□□ -0.58
USP40-213ENST00000483216 ATP2B4P23634 1241 aa11.44□□□□□ -0.58
USP40-213ENST00000483216 ARSJQ5FYB0 599 aaPredicted RBP11.44□□□□□ -0.58
USP40-213ENST00000483216 EFHC2Q5JST6 749 aa11.44□□□□□ -0.58
USP40-213ENST00000483216 NLRP8Q86W28 1048 aa11.44□□□□□ -0.58
USP40-213ENST00000483216 COL26A1Q96A83 441 aa11.44□□□□□ -0.58
USP40-213ENST00000483216 VTI1AQ96AJ9 217 aa11.44□□□□□ -0.58
USP40-213ENST00000483216 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.44□□□□□ -0.58
USP40-213ENST00000483216 ERBB4Q15303 1308 aa11.43□□□□□ -0.58
USP40-213ENST00000483216 A0A1W2PNR3 127 aa11.43□□□□□ -0.58
USP40-213ENST00000483216 CARNS1A5YM72 827 aa11.43□□□□□ -0.58
USP40-213ENST00000483216 BICDL1Q6ZP65 573 aa11.43□□□□□ -0.58
USP40-213ENST00000483216 SSFA2P28290 1259 aa11.42□□□□□ -0.58
USP40-213ENST00000483216 LCE2AQ5TA79 106 aaPredicted RBP11.42□□□□□ -0.58
USP40-213ENST00000483216 RHPN1Q8TCX5 695 aa11.42□□□□□ -0.58
USP40-213ENST00000483216 PTCD1O75127 700 aaKnown RBP11.41□□□□□ -0.58
USP40-213ENST00000483216 UBAP2LQ14157 1087 aaKnown RBP11.41□□□□□ -0.58
USP40-213ENST00000483216 RTN1Q16799 776 aa11.41□□□□□ -0.58
USP40-213ENST00000483216 LCE2CQ5TA81 110 aa11.41□□□□□ -0.58
USP40-213ENST00000483216 NGLY1Q96IV0 654 aa11.41□□□□□ -0.58
USP40-213ENST00000483216 FOXR1Q6PIV2 292 aa11.4□□□□□ -0.58
USP40-213ENST00000483216 FIGNL1Q6PIW4 674 aa11.4□□□□□ -0.58
USP40-213ENST00000483216 GPR161Q8N6U8 529 aaKnown RBP11.4□□□□□ -0.58
USP40-213ENST00000483216 GTPBP3Q969Y2 492 aaKnown RBP11.4□□□□□ -0.58
USP40-213ENST00000483216 MYO19Q96H55 970 aa11.39□□□□□ -0.59
USP40-213ENST00000483216 QTRT2Q9H974 415 aaKnown RBP11.39□□□□□ -0.59
USP40-213ENST00000483216 HIF1AQ16665 826 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms