RNA–Protein interactions for RNA: ENST00000478548.1

MEN1-215, Transcript of menin 1, human

TSL 2

Gene MEN1, Length 1,341 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MEN1-215	ENST00000478548	CCDC87	Q9NVE4	849 aa		31.43	■■■□□ 2.62
MEN1-215	ENST00000478548	PRAMEF22	A3QJZ6	481 aa		31.41	■■■□□ 2.62
MEN1-215	ENST00000478548	C4A	P0C0L4	1744 aa		31.41	■■■□□ 2.62
MEN1-215	ENST00000478548	TRAPPC3L	Q5T215	181 aa		31.41	■■■□□ 2.62
MEN1-215	ENST00000478548	ARHGEF1	Q92888	912 aa	Known RBP	31.41	■■■□□ 2.62
MEN1-215	ENST00000478548	ADRA2B	P18089	450 aa		31.4	■■■□□ 2.62
MEN1-215	ENST00000478548	TEX13A	Q9BXU3	409 aa	Predicted RBP	31.4	■■■□□ 2.62
MEN1-215	ENST00000478548	ZBTB1	Q9Y2K1	713 aa		31.4	■■■□□ 2.62
MEN1-215	ENST00000478548	USP16	Q9Y5T5	823 aa		31.39	■■■□□ 2.62
MEN1-215	ENST00000478548	SOS1	Q07889	1333 aa	Predicted RBP	31.37	■■■□□ 2.61
MEN1-215	ENST00000478548	EIF4A1	P60842	406 aa	Known RBP	31.37	■■■□□ 2.61
MEN1-215	ENST00000478548	SYT17	Q9BSW7	474 aa		31.37	■■■□□ 2.61
MEN1-215	ENST00000478548	STARD3NL	O95772	234 aa		31.36	■■■□□ 2.61
MEN1-215	ENST00000478548	SNRPA1	P09661	255 aa	Known RBP	31.36	■■■□□ 2.61
MEN1-215	ENST00000478548	BABAM1	Q9NWV8	329 aa		31.36	■■■□□ 2.61
MEN1-215	ENST00000478548	CHL1	O00533	1208 aa		31.33	■■■□□ 2.61
MEN1-215	ENST00000478548	GIGYF1	O75420	1035 aa	Predicted RBP	31.32	■■■□□ 2.6
MEN1-215	ENST00000478548	A1BG	P04217	495 aa		31.32	■■■□□ 2.6
MEN1-215	ENST00000478548	KLHL34	Q8N239	644 aa		31.32	■■■□□ 2.6
MEN1-215	ENST00000478548	TSPYL4	Q9UJ04	414 aa		31.32	■■■□□ 2.6
MEN1-215	ENST00000478548	CANX	P27824	592 aa	Known RBP	31.31	■■■□□ 2.6
MEN1-215	ENST00000478548	RFC4	P35249	363 aa		31.31	■■■□□ 2.6
MEN1-215	ENST00000478548	EIF5	P55010	431 aa	Known RBP	31.31	■■■□□ 2.6
MEN1-215	ENST00000478548	GYS1	P13807	737 aa		31.3	■■■□□ 2.6
MEN1-215	ENST00000478548	LAMB4	A4D0S4	1761 aa		31.3	■■■□□ 2.6
MEN1-215	ENST00000478548	USP42	Q9H9J4	1324 aa	Known RBP	31.3	■■■□□ 2.6
MEN1-215	ENST00000478548	SRP68	Q9UHB9	627 aa	Known RBP	31.29	■■■□□ 2.6
MEN1-215	ENST00000478548	COL15A1	P39059	1388 aa		31.29	■■■□□ 2.6
MEN1-215	ENST00000478548	SENP3-EIF4A1	A0A087X0R7	540 aa		31.28	■■■□□ 2.6
MEN1-215	ENST00000478548	FAM9B	Q8IZU0	186 aa		31.28	■■■□□ 2.6
MEN1-215	ENST00000478548	ZNF853	P0CG23	659 aa		31.27	■■■□□ 2.6
MEN1-215	ENST00000478548	IL6ST	P40189	918 aa	Predicted RBP	31.26	■■■□□ 2.6
MEN1-215	ENST00000478548	CCDC27	Q2M243	656 aa		31.26	■■■□□ 2.6
MEN1-215	ENST00000478548	NCBP3	Q53F19	620 aa	Known RBP	31.26	■■■□□ 2.6
MEN1-215	ENST00000478548	CFAP44	Q96MT7	982 aa		31.26	■■■□□ 2.6
MEN1-215	ENST00000478548	NBPF26	B4DH59	902 aa		31.24	■■■□□ 2.59
MEN1-215	ENST00000478548	NBPF10	Q6P3W6	841 aa	Known RBP	31.24	■■■□□ 2.59
MEN1-215	ENST00000478548	NLGN1	Q8N2Q7	840 aa		31.24	■■■□□ 2.59
MEN1-215	ENST00000478548	NBPF15	Q8N660	670 aa		31.24	■■■□□ 2.59
MEN1-215	ENST00000478548	NARF	Q9UHQ1	456 aa		31.24	■■■□□ 2.59
MEN1-215	ENST00000478548	CCER2	I3L3R5	266 aa		31.24	■■■□□ 2.59
MEN1-215	ENST00000478548	PIP4K2A	P48426	406 aa	Predicted RBP	31.24	■■■□□ 2.59
MEN1-215	ENST00000478548	DIEXF	Q68CQ4	756 aa	Known RBP	31.24	■■■□□ 2.59
MEN1-215	ENST00000478548	LAS1L	Q9Y4W2	734 aa	Known RBP	31.24	■■■□□ 2.59
MEN1-215	ENST00000478548	NLGN2	Q8NFZ4	835 aa		31.23	■■■□□ 2.59
MEN1-215	ENST00000478548	BCL2L12	Q9HB09	334 aa		31.23	■■■□□ 2.59
MEN1-215	ENST00000478548	FKBP8	Q14318	412 aa		31.22	■■■□□ 2.59
MEN1-215	ENST00000478548	USPL1	Q5W0Q7	1092 aa		31.22	■■■□□ 2.59
MEN1-215	ENST00000478548	WWC1	Q8IX03	1113 aa		31.22	■■■□□ 2.59
MEN1-215	ENST00000478548	MBIP	Q9NS73	344 aa		31.21	■■■□□ 2.59
MEN1-215	ENST00000478548	MMP10	P09238	476 aa		31.2	■■■□□ 2.58
MEN1-215	ENST00000478548	KRT24	Q2M2I5	525 aa		31.2	■■■□□ 2.58
MEN1-215	ENST00000478548	IFT57	Q9NWB7	429 aa		31.2	■■■□□ 2.58
MEN1-215	ENST00000478548	DCAF8L1	A6NGE4	600 aa		31.19	■■■□□ 2.58
MEN1-215	ENST00000478548		A0A087WZG4	1122 aa		31.18	■■■□□ 2.58
MEN1-215	ENST00000478548	ZPR1	O75312	459 aa		31.18	■■■□□ 2.58
MEN1-215	ENST00000478548	CALD1	Q05682	793 aa	Known RBP	31.17	■■■□□ 2.58
MEN1-215	ENST00000478548	SCN7A	Q01118	1682 aa		31.16	■■■□□ 2.58
MEN1-215	ENST00000478548	TM4SF1	P30408	202 aa		31.16	■■■□□ 2.58
MEN1-215	ENST00000478548	GNAI1	P63096	354 aa		31.16	■■■□□ 2.58
MEN1-215	ENST00000478548	TBC1D2B	Q9UPU7	963 aa		31.16	■■■□□ 2.58
MEN1-215	ENST00000478548	MIER1	Q8N108	512 aa		31.15	■■■□□ 2.58
MEN1-215	ENST00000478548	ZNF330	Q9Y3S2	320 aa	Predicted RBP	31.15	■■■□□ 2.58
MEN1-215	ENST00000478548	CD2AP	Q9Y5K6	639 aa		31.15	■■■□□ 2.58
MEN1-215	ENST00000478548	BCOR	Q6W2J9	1755 aa		31.13	■■■□□ 2.57
MEN1-215	ENST00000478548	CAMTA2	O94983	1202 aa		31.13	■■■□□ 2.57
MEN1-215	ENST00000478548	DDR1	Q08345	913 aa		31.13	■■■□□ 2.57
MEN1-215	ENST00000478548	PDIA6	Q15084	440 aa		31.13	■■■□□ 2.57
MEN1-215	ENST00000478548	LRP10	Q7Z4F1	713 aa		31.12	■■■□□ 2.57
MEN1-215	ENST00000478548	DZIP3	Q86Y13	1208 aa	Known RBP	31.11	■■■□□ 2.57
MEN1-215	ENST00000478548	SALL2	Q9Y467	1007 aa	Predicted RBP	31.11	■■■□□ 2.57
MEN1-215	ENST00000478548	ERBB4	Q15303	1308 aa		31.1	■■■□□ 2.57
MEN1-215	ENST00000478548	NFIX	Q14938	502 aa		31.1	■■■□□ 2.57
MEN1-215	ENST00000478548	KIF13B	Q9NQT8	1826 aa		31.1	■■■□□ 2.57
MEN1-215	ENST00000478548	IL16	Q14005	1332 aa		31.09	■■■□□ 2.57
MEN1-215	ENST00000478548	POLRMT	O00411	1230 aa	Known RBP	31.09	■■■□□ 2.57
MEN1-215	ENST00000478548	EIF2S2	P20042	333 aa	Known RBP	31.09	■■■□□ 2.57
MEN1-215	ENST00000478548	UTRN	P46939	3433 aa		31.08	■■■□□ 2.57
MEN1-215	ENST00000478548	HOXB7	P09629	217 aa		31.08	■■■□□ 2.57
MEN1-215	ENST00000478548	WDR63	Q8IWG1	891 aa		31.07	■■■□□ 2.56
MEN1-215	ENST00000478548	NGEF	Q8N5V2	710 aa		31.07	■■■□□ 2.56
MEN1-215	ENST00000478548	PARP3	Q9Y6F1	533 aa		31.07	■■■□□ 2.56
MEN1-215	ENST00000478548	NRXN2	Q9P2S2	1712 aa		31.07	■■■□□ 2.56
MEN1-215	ENST00000478548	MYL6B	P14649	208 aa		31.06	■■■□□ 2.56
MEN1-215	ENST00000478548	GPR162	Q16538	588 aa		31.06	■■■□□ 2.56
MEN1-215	ENST00000478548	PROSER3	Q2NL68	480 aa		31.06	■■■□□ 2.56
MEN1-215	ENST00000478548	DUSP27	Q5VZP5	1158 aa		31.06	■■■□□ 2.56
MEN1-215	ENST00000478548	PELP1	Q8IZL8	1130 aa	Known RBP	31.06	■■■□□ 2.56
MEN1-215	ENST00000478548	AFDN	P55196	1824 aa	Known RBP	31.06	■■■□□ 2.56
MEN1-215	ENST00000478548	GOLGB1	Q14789	3259 aa	Known RBP	31.05	■■■□□ 2.56
MEN1-215	ENST00000478548	TBC1D9B	Q66K14	1250 aa		31.05	■■■□□ 2.56
MEN1-215	ENST00000478548	NPM2	Q86SE8	214 aa	Known RBP	31.05	■■■□□ 2.56
MEN1-215	ENST00000478548	C8orf58	Q8NAV2	365 aa		31.05	■■■□□ 2.56
MEN1-215	ENST00000478548	TSR2	Q969E8	191 aa	Known RBP	31.05	■■■□□ 2.56
MEN1-215	ENST00000478548	C10orf71	Q711Q0	1435 aa		31.05	■■■□□ 2.56
MEN1-215	ENST00000478548	KIAA1551	Q9HCM1	1747 aa		31.04	■■■□□ 2.56
MEN1-215	ENST00000478548	ZNF521	Q96K83	1311 aa		31.04	■■■□□ 2.56
MEN1-215	ENST00000478548	NECTIN2	Q92692	538 aa		31.03	■■■□□ 2.56
MEN1-215	ENST00000478548	SPINK5	Q9NQ38	1064 aa	Predicted RBP	31.03	■■■□□ 2.56
MEN1-215	ENST00000478548	RGL2	O15211	777 aa		31.02	■■■□□ 2.56

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms