RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 COL23A1Q86Y22 540 aaPredicted RBP9.03□□□□□ -0.96
BRCA1-215ENST00000478531 VSIG10Q8N0Z9 540 aa9.03□□□□□ -0.96
BRCA1-215ENST00000478531 MIER1Q8N108 512 aa9.03□□□□□ -0.96
BRCA1-215ENST00000478531 ATF5Q9Y2D1 282 aaPredicted RBP9.03□□□□□ -0.96
BRCA1-215ENST00000478531 RTCBQ9Y3I0 505 aaKnown RBP9.03□□□□□ -0.96
BRCA1-215ENST00000478531 PRAMEF22A3QJZ6 481 aa9.02□□□□□ -0.97
BRCA1-215ENST00000478531 SSFA2P28290 1259 aa9.02□□□□□ -0.97
BRCA1-215ENST00000478531 MSL1Q68DK7 614 aa9.02□□□□□ -0.97
BRCA1-215ENST00000478531 SPON1Q9HCB6 807 aa9.02□□□□□ -0.97
BRCA1-215ENST00000478531 CCDC87Q9NVE4 849 aa9.02□□□□□ -0.97
BRCA1-215ENST00000478531 CCER2I3L3R5 266 aa9.01□□□□□ -0.97
BRCA1-215ENST00000478531 CYP19A1P11511 503 aaPredicted RBP9.01□□□□□ -0.97
BRCA1-215ENST00000478531 MTFR1LQ9H019 292 aa9.01□□□□□ -0.97
BRCA1-215ENST00000478531 ZBTB1Q9Y2K1 713 aa9.01□□□□□ -0.97
BRCA1-215ENST00000478531 ZNF330Q9Y3S2 320 aaPredicted RBP9.01□□□□□ -0.97
BRCA1-215ENST00000478531 STARD3NLO95772 234 aa9.01□□□□□ -0.97
BRCA1-215ENST00000478531 CANXP27824 592 aaKnown RBP9.01□□□□□ -0.97
BRCA1-215ENST00000478531 RC3H1Q5TC82 1133 aaKnown RBP9.01□□□□□ -0.97
BRCA1-215ENST00000478531 INTS5Q6P9B9 1019 aaKnown RBP9.01□□□□□ -0.97
BRCA1-215ENST00000478531 FLAD1Q8NFF5 587 aa9.01□□□□□ -0.97
BRCA1-215ENST00000478531 COL24A1Q17RW2 1714 aa9□□□□□ -0.97
BRCA1-215ENST00000478531 COL15A1P39059 1388 aa9□□□□□ -0.97
BRCA1-215ENST00000478531 SNRPA1P09661 255 aaKnown RBP9□□□□□ -0.97
BRCA1-215ENST00000478531 PIP4K2AP48426 406 aaPredicted RBP9□□□□□ -0.97
BRCA1-215ENST00000478531 TRAPPC3LQ5T215 181 aa9□□□□□ -0.97
BRCA1-215ENST00000478531 PPP1R1BQ9UD71 204 aaPredicted RBP9□□□□□ -0.97
BRCA1-215ENST00000478531 RPS6KA4O75676 772 aa8.99□□□□□ -0.97
BRCA1-215ENST00000478531 EIF4A1P60842 406 aaKnown RBP8.99□□□□□ -0.97
BRCA1-215ENST00000478531 CALD1Q05682 793 aaKnown RBP8.99□□□□□ -0.97
BRCA1-215ENST00000478531 TEX13AQ9BXU3 409 aaPredicted RBP8.99□□□□□ -0.97
BRCA1-215ENST00000478531 USP16Q9Y5T5 823 aa8.99□□□□□ -0.97
BRCA1-215ENST00000478531 SCN7AQ01118 1682 aa8.99□□□□□ -0.97
BRCA1-215ENST00000478531 SOS1Q07889 1333 aaPredicted RBP8.99□□□□□ -0.97
BRCA1-215ENST00000478531 A1BGP04217 495 aa8.99□□□□□ -0.97
BRCA1-215ENST00000478531 RFC4P35249 363 aa8.99□□□□□ -0.97
BRCA1-215ENST00000478531 WWC1Q8IX03 1113 aa8.99□□□□□ -0.97
BRCA1-215ENST00000478531 SLC16A10Q8TF71 515 aa8.99□□□□□ -0.97
BRCA1-215ENST00000478531 ARHGEF1Q92888 912 aaKnown RBP8.99□□□□□ -0.97
BRCA1-215ENST00000478531 CFAP44Q96MT7 982 aa8.99□□□□□ -0.97
BRCA1-215ENST00000478531 BCORQ6W2J9 1755 aa8.98□□□□□ -0.97
BRCA1-215ENST00000478531 CHL1O00533 1208 aa8.98□□□□□ -0.97
BRCA1-215ENST00000478531 GIGYF1O75420 1035 aaPredicted RBP8.98□□□□□ -0.97
BRCA1-215ENST00000478531 POLD1P28340 1107 aa8.98□□□□□ -0.97
BRCA1-215ENST00000478531 KRT24Q2M2I5 525 aa8.98□□□□□ -0.97
BRCA1-215ENST00000478531 ARXQ96QS3 562 aa8.98□□□□□ -0.97
BRCA1-215ENST00000478531 MBIPQ9NS73 344 aa8.98□□□□□ -0.97
BRCA1-215ENST00000478531 BABAM1Q9NWV8 329 aa8.98□□□□□ -0.97
BRCA1-215ENST00000478531 SRP68Q9UHB9 627 aaKnown RBP8.98□□□□□ -0.97
BRCA1-215ENST00000478531 PTGER2P43116 358 aa8.97□□□□□ -0.97
BRCA1-215ENST00000478531 GNAI1P63096 354 aa8.97□□□□□ -0.97
BRCA1-215ENST00000478531 NPM2Q86SE8 214 aaKnown RBP8.97□□□□□ -0.97
BRCA1-215ENST00000478531 KLHL34Q8N239 644 aa8.97□□□□□ -0.97
BRCA1-215ENST00000478531 NECTIN2Q92692 538 aa8.97□□□□□ -0.97
BRCA1-215ENST00000478531 IFT57Q9NWB7 429 aa8.97□□□□□ -0.97
BRCA1-215ENST00000478531 ZPR1O75312 459 aa8.97□□□□□ -0.97
BRCA1-215ENST00000478531 EIF2S2P20042 333 aaKnown RBP8.97□□□□□ -0.97
BRCA1-215ENST00000478531 CCDC27Q2M243 656 aa8.97□□□□□ -0.97
BRCA1-215ENST00000478531 TSR2Q969E8 191 aaKnown RBP8.97□□□□□ -0.97
BRCA1-215ENST00000478531 USP42Q9H9J4 1324 aaKnown RBP8.96□□□□□ -0.97
BRCA1-215ENST00000478531 ZNF853P0CG23 659 aa8.96□□□□□ -0.98
BRCA1-215ENST00000478531 GYS1P13807 737 aa8.95□□□□□ -0.98
BRCA1-215ENST00000478531 MYL6BP14649 208 aa8.95□□□□□ -0.98
BRCA1-215ENST00000478531 IL6STP40189 918 aaPredicted RBP8.95□□□□□ -0.98
BRCA1-215ENST00000478531 EIF5P55010 431 aaKnown RBP8.95□□□□□ -0.98
BRCA1-215ENST00000478531 USPL1Q5W0Q7 1092 aa8.95□□□□□ -0.98
BRCA1-215ENST00000478531 NGEFQ8N5V2 710 aa8.95□□□□□ -0.98
BRCA1-215ENST00000478531 SGIP1Q9BQI5 828 aa8.95□□□□□ -0.98
BRCA1-215ENST00000478531 TBC1D2BQ9UPU7 963 aa8.95□□□□□ -0.98
BRCA1-215ENST00000478531 AFDNP55196 1824 aaKnown RBP8.95□□□□□ -0.98
BRCA1-215ENST00000478531 NBPF26B4DH59 902 aa8.95□□□□□ -0.98
BRCA1-215ENST00000478531 ELL2O00472 640 aaPredicted RBP8.95□□□□□ -0.98
BRCA1-215ENST00000478531 NBPF10Q6P3W6 841 aaKnown RBP8.95□□□□□ -0.98
BRCA1-215ENST00000478531 NBPF15Q8N660 670 aa8.95□□□□□ -0.98
BRCA1-215ENST00000478531 NUP98P52948 1817 aa8.94□□□□□ -0.98
BRCA1-215ENST00000478531 A0A087WZG4 1122 aa8.94□□□□□ -0.98
BRCA1-215ENST00000478531 ANXA1P04083 346 aa8.94□□□□□ -0.98
BRCA1-215ENST00000478531 MMP10P09238 476 aa8.94□□□□□ -0.98
BRCA1-215ENST00000478531 FKBP8Q14318 412 aa8.94□□□□□ -0.98
BRCA1-215ENST00000478531 DUSP27Q5VZP5 1158 aa8.94□□□□□ -0.98
BRCA1-215ENST00000478531 DZIP3Q86Y13 1208 aaKnown RBP8.94□□□□□ -0.98
BRCA1-215ENST00000478531 NARFQ9UHQ1 456 aa8.94□□□□□ -0.98
BRCA1-215ENST00000478531 FANCIQ9NVI1 1328 aa8.94□□□□□ -0.98
BRCA1-215ENST00000478531 HDGFL1Q5TGJ6 251 aa8.93□□□□□ -0.98
BRCA1-215ENST00000478531 FHDC1Q9C0D6 1143 aaPredicted RBP8.93□□□□□ -0.98
BRCA1-215ENST00000478531 IL16Q14005 1332 aa8.93□□□□□ -0.98
BRCA1-215ENST00000478531 PROSER3Q2NL68 480 aa8.93□□□□□ -0.98
BRCA1-215ENST00000478531 BICDL1Q6ZP65 573 aa8.93□□□□□ -0.98
BRCA1-215ENST00000478531 WDR63Q8IWG1 891 aa8.93□□□□□ -0.98
BRCA1-215ENST00000478531 NLGN1Q8N2Q7 840 aa8.93□□□□□ -0.98
BRCA1-215ENST00000478531 C8orf58Q8NAV2 365 aa8.93□□□□□ -0.98
BRCA1-215ENST00000478531 SPINK5Q9NQ38 1064 aaPredicted RBP8.92□□□□□ -0.98
BRCA1-215ENST00000478531 CHPF2Q9P2E5 772 aa8.92□□□□□ -0.98
BRCA1-215ENST00000478531 PARP3Q9Y6F1 533 aa8.92□□□□□ -0.98
BRCA1-215ENST00000478531 ANKRD36CQ5JPF3 1778 aa8.92□□□□□ -0.98
BRCA1-215ENST00000478531 N4BP2Q86UW6 1770 aaPredicted RBP8.92□□□□□ -0.98
BRCA1-215ENST00000478531 KIF13BQ9NQT8 1826 aa8.92□□□□□ -0.98
BRCA1-215ENST00000478531 CAMTA2O94983 1202 aa8.92□□□□□ -0.98
BRCA1-215ENST00000478531 HOXB7P09629 217 aa8.92□□□□□ -0.98
BRCA1-215ENST00000478531 KIF6Q6ZMV9 814 aa8.92□□□□□ -0.98
BRCA1-215ENST00000478531 TSPYL6Q8N831 410 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms