RNA–Protein interactions for RNA: ENST00000477440.6

ARHGEF3-208, Transcript of Rho guanine nucleotide exchange factor 3, human

TSL 3

Gene ARHGEF3, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ARHGEF3-208	ENST00000477440	LMOD3	Q0VAK6	560 aa		33.4	■■■□□ 2.94
ARHGEF3-208	ENST00000477440	ZBTB1	Q9Y2K1	713 aa		33.4	■■■□□ 2.94
ARHGEF3-208	ENST00000477440	PNISR	Q8TF01	805 aa	Known RBP	33.38	■■■□□ 2.93
ARHGEF3-208	ENST00000477440	LAMB4	A4D0S4	1761 aa		33.38	■■■□□ 2.93
ARHGEF3-208	ENST00000477440	SOS1	Q07889	1333 aa	Predicted RBP	33.37	■■■□□ 2.93
ARHGEF3-208	ENST00000477440	TRIM35	Q9UPQ4	493 aa		33.37	■■■□□ 2.93
ARHGEF3-208	ENST00000477440	PRAMEF22	A3QJZ6	481 aa		33.36	■■■□□ 2.93
ARHGEF3-208	ENST00000477440	STARD3NL	O95772	234 aa		33.36	■■■□□ 2.93
ARHGEF3-208	ENST00000477440	TEX13A	Q9BXU3	409 aa	Predicted RBP	33.36	■■■□□ 2.93
ARHGEF3-208	ENST00000477440	FHDC1	Q9C0D6	1143 aa	Predicted RBP	33.36	■■■□□ 2.93
ARHGEF3-208	ENST00000477440	RFC4	P35249	363 aa		33.35	■■■□□ 2.93
ARHGEF3-208	ENST00000477440	APAF1	O14727	1248 aa		33.34	■■■□□ 2.93
ARHGEF3-208	ENST00000477440	COL15A1	P39059	1388 aa		33.33	■■■□□ 2.93
ARHGEF3-208	ENST00000477440	CANX	P27824	592 aa	Known RBP	33.32	■■■□□ 2.92
ARHGEF3-208	ENST00000477440	SNRPA1	P09661	255 aa	Known RBP	33.31	■■■□□ 2.92
ARHGEF3-208	ENST00000477440	SRP68	Q9UHB9	627 aa	Known RBP	33.31	■■■□□ 2.92
ARHGEF3-208	ENST00000477440	USP16	Q9Y5T5	823 aa		33.31	■■■□□ 2.92
ARHGEF3-208	ENST00000477440	GYS1	P13807	737 aa		33.3	■■■□□ 2.92
ARHGEF3-208	ENST00000477440	USP42	Q9H9J4	1324 aa	Known RBP	33.29	■■■□□ 2.92
ARHGEF3-208	ENST00000477440	SYT17	Q9BSW7	474 aa		33.29	■■■□□ 2.92
ARHGEF3-208	ENST00000477440	TSPYL4	Q9UJ04	414 aa		33.29	■■■□□ 2.92
ARHGEF3-208	ENST00000477440	A1BG	P04217	495 aa		33.28	■■■□□ 2.92
ARHGEF3-208	ENST00000477440	EIF4A1	P60842	406 aa	Known RBP	33.28	■■■□□ 2.92
ARHGEF3-208	ENST00000477440	KLHL34	Q8N239	644 aa		33.28	■■■□□ 2.92
ARHGEF3-208	ENST00000477440	EIF5	P55010	431 aa	Known RBP	33.26	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	NLGN1	Q8N2Q7	840 aa		33.25	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	SCN7A	Q01118	1682 aa		33.24	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	GIGYF1	O75420	1035 aa	Predicted RBP	33.23	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	MMP10	P09238	476 aa		33.23	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	PIP4K2A	P48426	406 aa	Predicted RBP	33.23	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	BABAM1	Q9NWV8	329 aa		33.23	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	ZNF330	Q9Y3S2	320 aa	Predicted RBP	33.23	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	SENP3-EIF4A1	A0A087X0R7	540 aa		33.22	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	IL6ST	P40189	918 aa	Predicted RBP	33.22	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	FKBP8	Q14318	412 aa		33.22	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	USPL1	Q5W0Q7	1092 aa		33.22	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	NARF	Q9UHQ1	456 aa		33.22	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	ZPR1	O75312	459 aa		33.21	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	BCOR	Q6W2J9	1755 aa		33.2	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	LAS1L	Q9Y4W2	734 aa	Known RBP	33.2	■■■□□ 2.91
ARHGEF3-208	ENST00000477440	CHL1	O00533	1208 aa		33.19	■■■□□ 2.9
ARHGEF3-208	ENST00000477440	KIF13B	Q9NQT8	1826 aa		33.17	■■■□□ 2.9
ARHGEF3-208	ENST00000477440	NBPF26	B4DH59	902 aa		33.17	■■■□□ 2.9
ARHGEF3-208	ENST00000477440	NBPF10	Q6P3W6	841 aa	Known RBP	33.17	■■■□□ 2.9
ARHGEF3-208	ENST00000477440	NBPF15	Q8N660	670 aa		33.17	■■■□□ 2.9
ARHGEF3-208	ENST00000477440	NLGN2	Q8NFZ4	835 aa		33.17	■■■□□ 2.9
ARHGEF3-208	ENST00000477440	BCL2L12	Q9HB09	334 aa		33.17	■■■□□ 2.9
ARHGEF3-208	ENST00000477440		A0A087WZG4	1122 aa		33.16	■■■□□ 2.9
ARHGEF3-208	ENST00000477440	FAM9B	Q8IZU0	186 aa		33.16	■■■□□ 2.9
ARHGEF3-208	ENST00000477440	TBC1D2B	Q9UPU7	963 aa		33.15	■■■□□ 2.9
ARHGEF3-208	ENST00000477440	CFAP44	Q96MT7	982 aa		33.14	■■■□□ 2.9
ARHGEF3-208	ENST00000477440	AFDN	P55196	1824 aa	Known RBP	33.14	■■■□□ 2.9
ARHGEF3-208	ENST00000477440	DDR1	Q08345	913 aa		33.13	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	KRT24	Q2M2I5	525 aa		33.12	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	CD2AP	Q9Y5K6	639 aa		33.12	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	PARP3	Q9Y6F1	533 aa		33.12	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	ZNF853	P0CG23	659 aa		33.11	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	NPM2	Q86SE8	214 aa	Known RBP	33.11	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	KIAA1551	Q9HCM1	1747 aa		33.11	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	TM4SF1	P30408	202 aa		33.1	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	DZIP3	Q86Y13	1208 aa	Known RBP	33.1	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	MBIP	Q9NS73	344 aa		33.1	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	C10orf71	Q711Q0	1435 aa		33.1	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	GOLGB1	Q14789	3259 aa	Known RBP	33.09	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	CALD1	Q05682	793 aa	Known RBP	33.09	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	CCDC27	Q2M243	656 aa		33.09	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	IFT57	Q9NWB7	429 aa		33.09	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	NRXN2	Q9P2S2	1712 aa		33.08	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	CAMTA2	O94983	1202 aa		33.08	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	NFIX	Q14938	502 aa		33.08	■■■□□ 2.89
ARHGEF3-208	ENST00000477440	POLRMT	O00411	1230 aa	Known RBP	33.07	■■■□□ 2.88
ARHGEF3-208	ENST00000477440	N4BP2	Q86UW6	1770 aa	Predicted RBP	33.06	■■■□□ 2.88
ARHGEF3-208	ENST00000477440	GNAI1	P63096	354 aa		33.06	■■■□□ 2.88
ARHGEF3-208	ENST00000477440	WWC1	Q8IX03	1113 aa		33.06	■■■□□ 2.88
ARHGEF3-208	ENST00000477440	EIF2S2	P20042	333 aa	Known RBP	33.05	■■■□□ 2.88
ARHGEF3-208	ENST00000477440	UTRN	P46939	3433 aa		33.04	■■■□□ 2.88
ARHGEF3-208	ENST00000477440	ERBB4	Q15303	1308 aa		33.03	■■■□□ 2.88
ARHGEF3-208	ENST00000477440	MYL6B	P14649	208 aa		33.03	■■■□□ 2.88
ARHGEF3-208	ENST00000477440	NCBP3	Q53F19	620 aa	Known RBP	33.03	■■■□□ 2.88
ARHGEF3-208	ENST00000477440	TBC1D9B	Q66K14	1250 aa		33.03	■■■□□ 2.88
ARHGEF3-208	ENST00000477440	BICDL1	Q6ZP65	573 aa		33.03	■■■□□ 2.88
ARHGEF3-208	ENST00000477440	SALL2	Q9Y467	1007 aa	Predicted RBP	33.03	■■■□□ 2.88
ARHGEF3-208	ENST00000477440	NGEF	Q8N5V2	710 aa		33.02	■■■□□ 2.88
ARHGEF3-208	ENST00000477440	PXDNL	A1KZ92	1463 aa		33.01	■■■□□ 2.88
ARHGEF3-208	ENST00000477440	NUP98	P52948	1817 aa		33.01	■■■□□ 2.87
ARHGEF3-208	ENST00000477440	DCAF8L1	A6NGE4	600 aa		33.01	■■■□□ 2.87
ARHGEF3-208	ENST00000477440	NECTIN2	Q92692	538 aa		33.01	■■■□□ 2.87
ARHGEF3-208	ENST00000477440	DIEXF	Q68CQ4	756 aa	Known RBP	33	■■■□□ 2.87
ARHGEF3-208	ENST00000477440	CCER2	I3L3R5	266 aa		32.99	■■■□□ 2.87
ARHGEF3-208	ENST00000477440	PDIA6	Q15084	440 aa		32.99	■■■□□ 2.87
ARHGEF3-208	ENST00000477440	ANXA1	P04083	346 aa		32.98	■■■□□ 2.87
ARHGEF3-208	ENST00000477440	PROSER3	Q2NL68	480 aa		32.98	■■■□□ 2.87
ARHGEF3-208	ENST00000477440	BRCA1	P38398	1863 aa	Known RBP	32.97	■■■□□ 2.87
ARHGEF3-208	ENST00000477440	SERPINB2	P05120	415 aa		32.97	■■■□□ 2.87
ARHGEF3-208	ENST00000477440	HOXB7	P09629	217 aa		32.97	■■■□□ 2.87
ARHGEF3-208	ENST00000477440	DUSP27	Q5VZP5	1158 aa		32.97	■■■□□ 2.87
ARHGEF3-208	ENST00000477440	TTLL7	Q6ZT98	887 aa		32.97	■■■□□ 2.87
ARHGEF3-208	ENST00000477440	LRP10	Q7Z4F1	713 aa		32.97	■■■□□ 2.87
ARHGEF3-208	ENST00000477440	PELP1	Q8IZL8	1130 aa	Known RBP	32.97	■■■□□ 2.87
ARHGEF3-208	ENST00000477440	CARMIL3	Q8ND23	1372 aa		32.96	■■■□□ 2.87

Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms