RNA–Protein interactions for RNA: ENST00000476642.5

HLA-DPA1-246, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 519 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-246ENST00000476642 AK7Q96M32 723 aa17.19■□□□□ 0.34
HLA-DPA1-246ENST00000476642 LAS1LQ9Y4W2 734 aaKnown RBP17.19■□□□□ 0.34
HLA-DPA1-246ENST00000476642 CHL1O00533 1208 aa17.18■□□□□ 0.34
HLA-DPA1-246ENST00000476642 SNRPA1P09661 255 aaKnown RBP17.18■□□□□ 0.34
HLA-DPA1-246ENST00000476642 CNTNAP4Q9C0A0 1308 aa17.18■□□□□ 0.34
HLA-DPA1-246ENST00000476642 ITPK1Q13572 414 aa17.17■□□□□ 0.34
HLA-DPA1-246ENST00000476642 SLC4A9Q96Q91 983 aa17.17■□□□□ 0.34
HLA-DPA1-246ENST00000476642 MIS18AQ9NYP9 233 aa17.17■□□□□ 0.34
HLA-DPA1-246ENST00000476642 EIF4A1P60842 406 aaKnown RBP17.16■□□□□ 0.34
HLA-DPA1-246ENST00000476642 COL23A1Q86Y22 540 aaPredicted RBP17.16■□□□□ 0.34
HLA-DPA1-246ENST00000476642 LINC00116Q8NCU8 138 aa17.16■□□□□ 0.34
HLA-DPA1-246ENST00000476642 CHMP4AQ9BY43 222 aa17.16■□□□□ 0.34
HLA-DPA1-246ENST00000476642 LAMB4A4D0S4 1761 aa17.15■□□□□ 0.34
HLA-DPA1-246ENST00000476642 KCNQ3O43525 872 aa17.15■□□□□ 0.34
HLA-DPA1-246ENST00000476642 ZNF853P0CG23 659 aa17.15■□□□□ 0.34
HLA-DPA1-246ENST00000476642 DNAJC10Q8IXB1 793 aa17.15■□□□□ 0.34
HLA-DPA1-246ENST00000476642 RTCBQ9Y3I0 505 aaKnown RBP17.15■□□□□ 0.34
HLA-DPA1-246ENST00000476642 SALL2Q9Y467 1007 aaPredicted RBP17.15■□□□□ 0.34
HLA-DPA1-246ENST00000476642 UBR3Q6ZT12 1888 aa17.14■□□□□ 0.33
HLA-DPA1-246ENST00000476642 SSFA2P28290 1259 aa17.14■□□□□ 0.33
HLA-DPA1-246ENST00000476642 NPM2Q86SE8 214 aaKnown RBP17.14■□□□□ 0.33
HLA-DPA1-246ENST00000476642 GNPATO15228 680 aa17.13■□□□□ 0.33
HLA-DPA1-246ENST00000476642 CYP19A1P11511 503 aaPredicted RBP17.13■□□□□ 0.33
HLA-DPA1-246ENST00000476642 ADRA2BP18089 450 aa17.13■□□□□ 0.33
HLA-DPA1-246ENST00000476642 CRKLP46109 303 aaKnown RBP17.13■□□□□ 0.33
HLA-DPA1-246ENST00000476642 MSL1Q68DK7 614 aa17.13■□□□□ 0.33
HLA-DPA1-246ENST00000476642 CCDC87Q9NVE4 849 aa17.13■□□□□ 0.33
HLA-DPA1-246ENST00000476642 TUBGCP6Q96RT7 1819 aa17.12■□□□□ 0.33
HLA-DPA1-246ENST00000476642 GIGYF1O75420 1035 aaPredicted RBP17.12■□□□□ 0.33
HLA-DPA1-246ENST00000476642 RPS6KA4O75676 772 aa17.12■□□□□ 0.33
HLA-DPA1-246ENST00000476642 HOXB7P09629 217 aa17.12■□□□□ 0.33
HLA-DPA1-246ENST00000476642 NLGN2Q8NFZ4 835 aa17.12■□□□□ 0.33
HLA-DPA1-246ENST00000476642 MYH16Q9H6N6 1097 aa17.12■□□□□ 0.33
HLA-DPA1-246ENST00000476642 MBIPQ9NS73 344 aa17.12■□□□□ 0.33
HLA-DPA1-246ENST00000476642 SOS1Q07889 1333 aaPredicted RBP17.12■□□□□ 0.33
HLA-DPA1-246ENST00000476642 GRIN3BO60391 1043 aa17.11■□□□□ 0.33
HLA-DPA1-246ENST00000476642 TRAPPC3LQ5T215 181 aa17.11■□□□□ 0.33
HLA-DPA1-246ENST00000476642 MYH14Q7Z406 1995 aaKnown RBP17.11■□□□□ 0.33
HLA-DPA1-246ENST00000476642 SENP3-EIF4A1A0A087X0R7 540 aa17.1■□□□□ 0.33
HLA-DPA1-246ENST00000476642 ERBB4Q15303 1308 aa17.1■□□□□ 0.33
HLA-DPA1-246ENST00000476642 CHD4Q14839 1912 aa17.09■□□□□ 0.33
HLA-DPA1-246ENST00000476642 A0A087WZG4 1122 aa17.09■□□□□ 0.33
HLA-DPA1-246ENST00000476642 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.09■□□□□ 0.33
HLA-DPA1-246ENST00000476642 GOLGA2Q08379 1002 aa17.09■□□□□ 0.33
HLA-DPA1-246ENST00000476642 INTS5Q6P9B9 1019 aaKnown RBP17.09■□□□□ 0.33
HLA-DPA1-246ENST00000476642 USP16Q9Y5T5 823 aa17.09■□□□□ 0.33
HLA-DPA1-246ENST00000476642 ZNF521Q96K83 1311 aa17.09■□□□□ 0.33
HLA-DPA1-246ENST00000476642 IL6STP40189 918 aaPredicted RBP17.08■□□□□ 0.32
HLA-DPA1-246ENST00000476642 E9PSI1 815 aa17.07■□□□□ 0.32
HLA-DPA1-246ENST00000476642 PHF14O94880 888 aa17.07■□□□□ 0.32
HLA-DPA1-246ENST00000476642 CANXP27824 592 aaKnown RBP17.07■□□□□ 0.32
HLA-DPA1-246ENST00000476642 RFC4P35249 363 aa17.07■□□□□ 0.32
HLA-DPA1-246ENST00000476642 HNRNPUQ00839 825 aaKnown RBP eCLIP17.07■□□□□ 0.32
HLA-DPA1-246ENST00000476642 ZBTB1Q9Y2K1 713 aa17.07■□□□□ 0.32
HLA-DPA1-246ENST00000476642 CD2APQ9Y5K6 639 aa17.06■□□□□ 0.32
HLA-DPA1-246ENST00000476642 COL24A1Q17RW2 1714 aa17.05■□□□□ 0.32
HLA-DPA1-246ENST00000476642 FANCIQ9NVI1 1328 aa17.05■□□□□ 0.32
HLA-DPA1-246ENST00000476642 C1QTNF8P60827 252 aa17.05■□□□□ 0.32
HLA-DPA1-246ENST00000476642 DUSP27Q5VZP5 1158 aa17.05■□□□□ 0.32
HLA-DPA1-246ENST00000476642 COL15A1P39059 1388 aa17.04■□□□□ 0.32
HLA-DPA1-246ENST00000476642 PRAMEF22A3QJZ6 481 aa17.04■□□□□ 0.32
HLA-DPA1-246ENST00000476642 ZPR1O75312 459 aa17.04■□□□□ 0.32
HLA-DPA1-246ENST00000476642 A1BGP04217 495 aa17.04■□□□□ 0.32
HLA-DPA1-246ENST00000476642 EIF2S2P20042 333 aaKnown RBP17.04■□□□□ 0.32
HLA-DPA1-246ENST00000476642 EIF5P55010 431 aaKnown RBP17.04■□□□□ 0.32
HLA-DPA1-246ENST00000476642 HDGFL1Q5TGJ6 251 aa17.04■□□□□ 0.32
HLA-DPA1-246ENST00000476642 ARHGEF1Q92888 912 aaKnown RBP17.04■□□□□ 0.32
HLA-DPA1-246ENST00000476642 TSR2Q969E8 191 aaKnown RBP17.04■□□□□ 0.32
HLA-DPA1-246ENST00000476642 C4AP0C0L4 1744 aa17.04■□□□□ 0.32
HLA-DPA1-246ENST00000476642 YBX3P16989 372 aaKnown RBP eCLIP17.03■□□□□ 0.32
HLA-DPA1-246ENST00000476642 CCDC30Q5VVM6 783 aa17.02■□□□□ 0.32
HLA-DPA1-246ENST00000476642 DBF4Q9UBU7 674 aaPredicted RBP17.02■□□□□ 0.32
HLA-DPA1-246ENST00000476642 ZNF330Q9Y3S2 320 aaPredicted RBP17.02■□□□□ 0.32
HLA-DPA1-246ENST00000476642 SLFN5Q08AF3 891 aa17.01■□□□□ 0.31
HLA-DPA1-246ENST00000476642 TWISTNBQ3B726 338 aaPredicted RBP17.01■□□□□ 0.31
HLA-DPA1-246ENST00000476642 NLGN1Q8N2Q7 840 aa17.01■□□□□ 0.31
HLA-DPA1-246ENST00000476642 DDX21Q9NR30 783 aaKnown RBP eCLIP17.01■□□□□ 0.31
HLA-DPA1-246ENST00000476642 NARFQ9UHQ1 456 aa17.01■□□□□ 0.31
HLA-DPA1-246ENST00000476642 CACNA1FO60840 1977 aa17■□□□□ 0.31
HLA-DPA1-246ENST00000476642 ZBED9Q6R2W3 1325 aa17■□□□□ 0.31
HLA-DPA1-246ENST00000476642 USP42Q9H9J4 1324 aaKnown RBP17■□□□□ 0.31
HLA-DPA1-246ENST00000476642 RGL2O15211 777 aa17■□□□□ 0.31
HLA-DPA1-246ENST00000476642 KRT24Q2M2I5 525 aa17■□□□□ 0.31
HLA-DPA1-246ENST00000476642 C8orf58Q8NAV2 365 aa17■□□□□ 0.31
HLA-DPA1-246ENST00000476642 ELL2O00472 640 aaPredicted RBP16.99■□□□□ 0.31
HLA-DPA1-246ENST00000476642 SMIM5Q71RC9 77 aa16.99■□□□□ 0.31
HLA-DPA1-246ENST00000476642 AMIGO3Q86WK7 504 aa16.99■□□□□ 0.31
HLA-DPA1-246ENST00000476642 STK31Q9BXU1 1019 aa16.99■□□□□ 0.31
HLA-DPA1-246ENST00000476642 SPINK5Q9NQ38 1064 aaPredicted RBP16.99■□□□□ 0.31
HLA-DPA1-246ENST00000476642 HYPKQ9NX55 129 aa16.99■□□□□ 0.31
HLA-DPA1-246ENST00000476642 ZNF652Q9Y2D9 606 aa16.99■□□□□ 0.31
HLA-DPA1-246ENST00000476642 NBPF26B4DH59 902 aa16.98■□□□□ 0.31
HLA-DPA1-246ENST00000476642 MYL6BP14649 208 aa16.98■□□□□ 0.31
HLA-DPA1-246ENST00000476642 EXOSC9Q06265 439 aaKnown RBP16.98■□□□□ 0.31
HLA-DPA1-246ENST00000476642 NBPF10Q6P3W6 841 aaKnown RBP16.98■□□□□ 0.31
HLA-DPA1-246ENST00000476642 KIF6Q6ZMV9 814 aa16.98■□□□□ 0.31
HLA-DPA1-246ENST00000476642 DZIP3Q86Y13 1208 aaKnown RBP16.98■□□□□ 0.31
HLA-DPA1-246ENST00000476642 NBPF15Q8N660 670 aa16.98■□□□□ 0.31
HLA-DPA1-246ENST00000476642 UTRNP46939 3433 aa16.98■□□□□ 0.31
HLA-DPA1-246ENST00000476642 SCN7AQ01118 1682 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms