RNA–Protein interactions for RNA: ENST00000474644.1

COL1A1-204, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 640 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-204ENST00000474644 GIGYF1O75420 1035 aaPredicted RBP20.49■□□□□ 0.87
COL1A1-204ENST00000474644 AMIGO3Q86WK7 504 aa20.49■□□□□ 0.87
COL1A1-204ENST00000474644 CCDC87Q9NVE4 849 aa20.49■□□□□ 0.87
COL1A1-204ENST00000474644 UBR3Q6ZT12 1888 aa20.49■□□□□ 0.87
COL1A1-204ENST00000474644 STARD3NLO95772 234 aa20.48■□□□□ 0.87
COL1A1-204ENST00000474644 KRT24Q2M2I5 525 aa20.48■□□□□ 0.87
COL1A1-204ENST00000474644 INTS5Q6P9B9 1019 aaKnown RBP20.48■□□□□ 0.87
COL1A1-204ENST00000474644 TSR2Q969E8 191 aaKnown RBP20.48■□□□□ 0.87
COL1A1-204ENST00000474644 USP16Q9Y5T5 823 aa20.48■□□□□ 0.87
COL1A1-204ENST00000474644 CASZ1Q86V15 1759 aa20.48■□□□□ 0.87
COL1A1-204ENST00000474644 MYH14Q7Z406 1995 aaKnown RBP20.47■□□□□ 0.87
COL1A1-204ENST00000474644 SPINK5Q9NQ38 1064 aaPredicted RBP20.47■□□□□ 0.87
COL1A1-204ENST00000474644 ZBTB1Q9Y2K1 713 aa20.47■□□□□ 0.87
COL1A1-204ENST00000474644 FANCIQ9NVI1 1328 aa20.47■□□□□ 0.87
COL1A1-204ENST00000474644 PHF14O94880 888 aa20.46■□□□□ 0.87
COL1A1-204ENST00000474644 HNRNPUQ00839 825 aaKnown RBP eCLIP20.46■□□□□ 0.87
COL1A1-204ENST00000474644 SMIM5Q71RC9 77 aa20.46■□□□□ 0.87
COL1A1-204ENST00000474644 RPS6KA4O75676 772 aa20.45■□□□□ 0.86
COL1A1-204ENST00000474644 SSFA2P28290 1259 aa20.45■□□□□ 0.86
COL1A1-204ENST00000474644 PDGFDQ9GZP0 370 aaPredicted RBP20.45■□□□□ 0.86
COL1A1-204ENST00000474644 RTCBQ9Y3I0 505 aaKnown RBP20.45■□□□□ 0.86
COL1A1-204ENST00000474644 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.44■□□□□ 0.86
COL1A1-204ENST00000474644 A1BGP04217 495 aa20.43■□□□□ 0.86
COL1A1-204ENST00000474644 GOLGA2Q08379 1002 aa20.43■□□□□ 0.86
COL1A1-204ENST00000474644 COL23A1Q86Y22 540 aaPredicted RBP20.43■□□□□ 0.86
COL1A1-204ENST00000474644 FLAD1Q8NFF5 587 aa20.43■□□□□ 0.86
COL1A1-204ENST00000474644 MYH16Q9H6N6 1097 aa20.43■□□□□ 0.86
COL1A1-204ENST00000474644 SOS1Q07889 1333 aaPredicted RBP20.43■□□□□ 0.86
COL1A1-204ENST00000474644 HOXB7P09629 217 aa20.42■□□□□ 0.86
COL1A1-204ENST00000474644 CANXP27824 592 aaKnown RBP20.42■□□□□ 0.86
COL1A1-204ENST00000474644 C4AP0C0L4 1744 aa20.41■□□□□ 0.86
COL1A1-204ENST00000474644 ADRA2BP18089 450 aa20.41■□□□□ 0.86
COL1A1-204ENST00000474644 PIP4K2AP48426 406 aaPredicted RBP20.41■□□□□ 0.86
COL1A1-204ENST00000474644 DUSP27Q5VZP5 1158 aa20.41■□□□□ 0.86
COL1A1-204ENST00000474644 C8orf58Q8NAV2 365 aa20.41■□□□□ 0.86
COL1A1-204ENST00000474644 COL15A1P39059 1388 aa20.41■□□□□ 0.86
COL1A1-204ENST00000474644 NBPF26B4DH59 902 aa20.4■□□□□ 0.86
COL1A1-204ENST00000474644 NBPF10Q6P3W6 841 aaKnown RBP20.4■□□□□ 0.86
COL1A1-204ENST00000474644 NBPF15Q8N660 670 aa20.4■□□□□ 0.86
COL1A1-204ENST00000474644 E9PSI1 815 aa20.39■□□□□ 0.85
COL1A1-204ENST00000474644 MSH5O43196 834 aa20.39■□□□□ 0.85
COL1A1-204ENST00000474644 EIF2S2P20042 333 aaKnown RBP20.39■□□□□ 0.85
COL1A1-204ENST00000474644 IL6STP40189 918 aaPredicted RBP20.39■□□□□ 0.85
COL1A1-204ENST00000474644 EIF5P55010 431 aaKnown RBP20.39■□□□□ 0.85
COL1A1-204ENST00000474644 TRAPPC3LQ5T215 181 aa20.39■□□□□ 0.85
COL1A1-204ENST00000474644 ERBB4Q15303 1308 aa20.38■□□□□ 0.85
COL1A1-204ENST00000474644 ELL2O00472 640 aaPredicted RBP20.38■□□□□ 0.85
COL1A1-204ENST00000474644 SLFN5Q08AF3 891 aa20.38■□□□□ 0.85
COL1A1-204ENST00000474644 HDGFL1Q5TGJ6 251 aa20.38■□□□□ 0.85
COL1A1-204ENST00000474644 TSPYL6Q8N831 410 aa20.38■□□□□ 0.85
COL1A1-204ENST00000474644 ARHGEF1Q92888 912 aaKnown RBP20.38■□□□□ 0.85
COL1A1-204ENST00000474644 CDCA7LQ96GN5 454 aa20.38■□□□□ 0.85
COL1A1-204ENST00000474644 ZBED9Q6R2W3 1325 aa20.37■□□□□ 0.85
COL1A1-204ENST00000474644 EXOSC9Q06265 439 aaKnown RBP20.37■□□□□ 0.85
COL1A1-204ENST00000474644 NECTIN2Q92692 538 aa20.37■□□□□ 0.85
COL1A1-204ENST00000474644 ZNF330Q9Y3S2 320 aaPredicted RBP20.37■□□□□ 0.85
COL1A1-204ENST00000474644 ZBTB7AO95365 584 aa20.36■□□□□ 0.85
COL1A1-204ENST00000474644 SLC16A10Q8TF71 515 aa20.36■□□□□ 0.85
COL1A1-204ENST00000474644 USP42Q9H9J4 1324 aaKnown RBP20.35■□□□□ 0.85
COL1A1-204ENST00000474644 RFC4P35249 363 aa20.35■□□□□ 0.85
COL1A1-204ENST00000474644 PDIA6Q15084 440 aa20.35■□□□□ 0.85
COL1A1-204ENST00000474644 TWISTNBQ3B726 338 aaPredicted RBP20.35■□□□□ 0.85
COL1A1-204ENST00000474644 MTFR1LQ9H019 292 aa20.35■□□□□ 0.85
COL1A1-204ENST00000474644 SCN7AQ01118 1682 aa20.35■□□□□ 0.85
COL1A1-204ENST00000474644 A0A087WZG4 1122 aa20.34■□□□□ 0.85
COL1A1-204ENST00000474644 MYL6BP14649 208 aa20.34■□□□□ 0.85
COL1A1-204ENST00000474644 PROSER3Q2NL68 480 aa20.34■□□□□ 0.85
COL1A1-204ENST00000474644 CHPF2Q9P2E5 772 aa20.34■□□□□ 0.85
COL1A1-204ENST00000474644 SRP68Q9UHB9 627 aaKnown RBP20.34■□□□□ 0.85
COL1A1-204ENST00000474644 LRP10Q7Z4F1 713 aa20.33■□□□□ 0.85
COL1A1-204ENST00000474644 TRMT2AQ8IZ69 625 aaKnown RBP20.33■□□□□ 0.85
COL1A1-204ENST00000474644 ANXA1P04083 346 aa20.32■□□□□ 0.84
COL1A1-204ENST00000474644 GYS1P13807 737 aa20.32■□□□□ 0.84
COL1A1-204ENST00000474644 MSL1Q68DK7 614 aa20.32■□□□□ 0.84
COL1A1-204ENST00000474644 NPM2Q86SE8 214 aaKnown RBP20.32■□□□□ 0.84
COL1A1-204ENST00000474644 DDX21Q9NR30 783 aaKnown RBP eCLIP20.32■□□□□ 0.84
COL1A1-204ENST00000474644 NARFQ9UHQ1 456 aa20.32■□□□□ 0.84
COL1A1-204ENST00000474644 COL24A1Q17RW2 1714 aa20.32■□□□□ 0.84
COL1A1-204ENST00000474644 DZIP3Q86Y13 1208 aaKnown RBP20.31■□□□□ 0.84
COL1A1-204ENST00000474644 DBF4Q9UBU7 674 aaPredicted RBP20.31■□□□□ 0.84
COL1A1-204ENST00000474644 TBC1D2BQ9UPU7 963 aa20.31■□□□□ 0.84
COL1A1-204ENST00000474644 ATF5Q9Y2D1 282 aaPredicted RBP20.31■□□□□ 0.84
COL1A1-204ENST00000474644 BCORQ6W2J9 1755 aa20.31■□□□□ 0.84
COL1A1-204ENST00000474644 ZPR1O75312 459 aa20.3■□□□□ 0.84
COL1A1-204ENST00000474644 VAMP4O75379 141 aa20.3■□□□□ 0.84
COL1A1-204ENST00000474644 USPL1Q5W0Q7 1092 aa20.3■□□□□ 0.84
COL1A1-204ENST00000474644 CCDC30Q5VVM6 783 aa20.29■□□□□ 0.84
COL1A1-204ENST00000474644 CHMP4AQ9BY43 222 aa20.29■□□□□ 0.84
COL1A1-204ENST00000474644 BCL2L12Q9HB09 334 aa20.29■□□□□ 0.84
COL1A1-204ENST00000474644 SPON1Q9HCB6 807 aa20.29■□□□□ 0.84
COL1A1-204ENST00000474644 CAMTA2O94983 1202 aa20.28■□□□□ 0.84
COL1A1-204ENST00000474644 TTLL7Q6ZT98 887 aa20.28■□□□□ 0.84
COL1A1-204ENST00000474644 ARXQ96QS3 562 aa20.28■□□□□ 0.84
COL1A1-204ENST00000474644 SGIP1Q9BQI5 828 aa20.28■□□□□ 0.84
COL1A1-204ENST00000474644 PTGER2P43116 358 aa20.27■□□□□ 0.84
COL1A1-204ENST00000474644 FKBP8Q14318 412 aa20.27■□□□□ 0.84
COL1A1-204ENST00000474644 HYPKQ9NX55 129 aa20.27■□□□□ 0.84
COL1A1-204ENST00000474644 TCERG1O14776 1098 aaKnown RBP20.26■□□□□ 0.83
COL1A1-204ENST00000474644 KIF6Q6ZMV9 814 aa20.26■□□□□ 0.83
COL1A1-204ENST00000474644 NLGN1Q8N2Q7 840 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms