RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 NXF1Q9UBU9 619 aaKnown RBP11.45□□□□□ -0.58
PTCD3-205ENST00000464541 PLA2G4AP47712 749 aa11.44□□□□□ -0.58
PTCD3-205ENST00000464541 NBPF1Q3BBV0 1214 aa11.44□□□□□ -0.58
PTCD3-205ENST00000464541 CCDC155Q8N6L0 562 aa11.44□□□□□ -0.58
PTCD3-205ENST00000464541 SCG3Q8WXD2 468 aaKnown RBP11.44□□□□□ -0.58
PTCD3-205ENST00000464541 ZDHHC3Q9NYG2 299 aa11.44□□□□□ -0.58
PTCD3-205ENST00000464541 SERTM1A2A2V5 107 aa11.43□□□□□ -0.58
PTCD3-205ENST00000464541 FOXO3O43524 673 aa11.43□□□□□ -0.58
PTCD3-205ENST00000464541 C21orf2O43822 256 aa11.43□□□□□ -0.58
PTCD3-205ENST00000464541 PPP1R12BO60237 982 aaPredicted RBP11.43□□□□□ -0.58
PTCD3-205ENST00000464541 NOS2P35228 1153 aa11.43□□□□□ -0.58
PTCD3-205ENST00000464541 PHKA2P46019 1235 aa11.43□□□□□ -0.58
PTCD3-205ENST00000464541 TMEM88BA6NKF7 163 aa11.42□□□□□ -0.58
PTCD3-205ENST00000464541 F11P03951 625 aa11.42□□□□□ -0.58
PTCD3-205ENST00000464541 ZDHHC1Q8WTX9 485 aa11.42□□□□□ -0.58
PTCD3-205ENST00000464541 L3MBTL2Q969R5 705 aa11.42□□□□□ -0.58
PTCD3-205ENST00000464541 GMCL1Q96IK5 515 aa11.42□□□□□ -0.58
PTCD3-205ENST00000464541 EML1O00423 815 aa11.41□□□□□ -0.58
PTCD3-205ENST00000464541 PPFIA3O75145 1194 aa11.41□□□□□ -0.58
PTCD3-205ENST00000464541 TBCELQ5QJ74 424 aa11.41□□□□□ -0.58
PTCD3-205ENST00000464541 C2orf49Q9BVC5 232 aaPredicted RBP11.41□□□□□ -0.58
PTCD3-205ENST00000464541 GPC6Q9Y625 555 aaPredicted RBP11.41□□□□□ -0.58
PTCD3-205ENST00000464541 LBRQ14739 615 aaKnown RBP11.4□□□□□ -0.58
PTCD3-205ENST00000464541 ZNF232Q9UNY5 417 aa11.4□□□□□ -0.58
PTCD3-205ENST00000464541 H7C1W4 665 aa11.39□□□□□ -0.59
PTCD3-205ENST00000464541 TATP17735 454 aaPredicted RBP11.39□□□□□ -0.59
PTCD3-205ENST00000464541 ITGA6P23229 1130 aa11.39□□□□□ -0.59
PTCD3-205ENST00000464541 OCLNQ16625 522 aa11.39□□□□□ -0.59
PTCD3-205ENST00000464541 TERTO14746 1132 aaKnown RBP11.38□□□□□ -0.59
PTCD3-205ENST00000464541 MSX1P28360 303 aa11.38□□□□□ -0.59
PTCD3-205ENST00000464541 C1orf53Q5VUE5 145 aa11.38□□□□□ -0.59
PTCD3-205ENST00000464541 RETREG2Q8NC44 543 aa11.38□□□□□ -0.59
PTCD3-205ENST00000464541 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.38□□□□□ -0.59
PTCD3-205ENST00000464541 CXXC1Q9P0U4 656 aaPredicted RBP11.38□□□□□ -0.59
PTCD3-205ENST00000464541 H3BM21 787 aa11.37□□□□□ -0.59
PTCD3-205ENST00000464541 PRMT3O60678 531 aa11.37□□□□□ -0.59
PTCD3-205ENST00000464541 SLC16A10Q8TF71 515 aa11.37□□□□□ -0.59
PTCD3-205ENST00000464541 AIDAQ96BJ3 306 aa11.37□□□□□ -0.59
PTCD3-205ENST00000464541 GAS2L1Q99501 681 aaPredicted RBP11.37□□□□□ -0.59
PTCD3-205ENST00000464541 CRISPLD1Q9H336 500 aa11.37□□□□□ -0.59
PTCD3-205ENST00000464541 ATP4AP20648 1035 aa11.36□□□□□ -0.59
PTCD3-205ENST00000464541 B4GALNT3Q6L9W6 998 aa11.36□□□□□ -0.59
PTCD3-205ENST00000464541 TRIM22Q8IYM9 498 aa11.36□□□□□ -0.59
PTCD3-205ENST00000464541 PGBD3Q8N328 593 aa11.36□□□□□ -0.59
PTCD3-205ENST00000464541 CHMP7Q8WUX9 453 aaPredicted RBP11.36□□□□□ -0.59
PTCD3-205ENST00000464541 NANOS1Q8WY41 292 aaKnown RBP11.36□□□□□ -0.59
PTCD3-205ENST00000464541 COL26A1Q96A83 441 aa11.36□□□□□ -0.59
PTCD3-205ENST00000464541 PRIMPOLQ96LW4 560 aa11.36□□□□□ -0.59
PTCD3-205ENST00000464541 PARP3Q9Y6F1 533 aa11.36□□□□□ -0.59
PTCD3-205ENST00000464541 ATP2B4P23634 1241 aa11.35□□□□□ -0.59
PTCD3-205ENST00000464541 VTI1AQ96AJ9 217 aa11.35□□□□□ -0.59
PTCD3-205ENST00000464541 LGR5O75473 907 aa11.34□□□□□ -0.59
PTCD3-205ENST00000464541 RIPOR1Q6ZS17 1223 aa11.34□□□□□ -0.59
PTCD3-205ENST00000464541 PTCD1O75127 700 aaKnown RBP11.33□□□□□ -0.6
PTCD3-205ENST00000464541 VSIG8P0DPA2 414 aa11.33□□□□□ -0.6
PTCD3-205ENST00000464541 TXLNAP40222 546 aa11.33□□□□□ -0.6
PTCD3-205ENST00000464541 FKBP5Q13451 457 aaPredicted RBP11.33□□□□□ -0.6
PTCD3-205ENST00000464541 EFHC2Q5JST6 749 aa11.33□□□□□ -0.6
PTCD3-205ENST00000464541 GPAMQ9HCL2 828 aa11.33□□□□□ -0.6
PTCD3-205ENST00000464541 SLAIN2Q9P270 581 aa11.33□□□□□ -0.6
PTCD3-205ENST00000464541 SSFA2P28290 1259 aa11.32□□□□□ -0.6
PTCD3-205ENST00000464541 HIF1AQ16665 826 aa11.32□□□□□ -0.6
PTCD3-205ENST00000464541 SH3PXD2AQ5TCZ1 1133 aa11.32□□□□□ -0.6
PTCD3-205ENST00000464541 NLRP8Q86W28 1048 aa11.32□□□□□ -0.6
PTCD3-205ENST00000464541 ALDH16A1Q8IZ83 802 aa11.32□□□□□ -0.6
PTCD3-205ENST00000464541 PHACTR1Q9C0D0 580 aa11.32□□□□□ -0.6
PTCD3-205ENST00000464541 RTN1Q16799 776 aa11.31□□□□□ -0.6
PTCD3-205ENST00000464541 ZNF775Q96BV0 537 aaPredicted RBP11.31□□□□□ -0.6
PTCD3-205ENST00000464541 NUCKS1Q9H1E3 243 aaKnown RBP11.31□□□□□ -0.6
PTCD3-205ENST00000464541 HCN4Q9Y3Q4 1203 aa11.31□□□□□ -0.6
PTCD3-205ENST00000464541 NFX1Q12986 1120 aaKnown RBP11.3□□□□□ -0.6
PTCD3-205ENST00000464541 ARSJQ5FYB0 599 aaPredicted RBP11.3□□□□□ -0.6
PTCD3-205ENST00000464541 SV2AQ7L0J3 742 aa11.3□□□□□ -0.6
PTCD3-205ENST00000464541 RHPN1Q8TCX5 695 aa11.3□□□□□ -0.6
PTCD3-205ENST00000464541 C7orf43Q8WVR3 580 aa11.3□□□□□ -0.6
PTCD3-205ENST00000464541 ZNF837Q96EG3 531 aaPredicted RBP11.3□□□□□ -0.6
PTCD3-205ENST00000464541 ZIC5Q96T25 663 aa11.3□□□□□ -0.6
PTCD3-205ENST00000464541 RUBCNLQ9H714 662 aa11.3□□□□□ -0.6
PTCD3-205ENST00000464541 CUEDC1Q9NWM3 386 aaPredicted RBP11.3□□□□□ -0.6
PTCD3-205ENST00000464541 DBN1Q16643 649 aa11.29□□□□□ -0.6
PTCD3-205ENST00000464541 FOXR1Q6PIV2 292 aa11.29□□□□□ -0.6
PTCD3-205ENST00000464541 FIGNL1Q6PIW4 674 aa11.29□□□□□ -0.6
PTCD3-205ENST00000464541 BICDL1Q6ZP65 573 aa11.29□□□□□ -0.6
PTCD3-205ENST00000464541 IRF7Q92985 503 aa11.29□□□□□ -0.6
PTCD3-205ENST00000464541 MYO19Q96H55 970 aa11.29□□□□□ -0.6
PTCD3-205ENST00000464541 A0A1W2PNR3 127 aa11.28□□□□□ -0.6
PTCD3-205ENST00000464541 VEGFBP49765 207 aa11.28□□□□□ -0.6
PTCD3-205ENST00000464541 ANKIB1Q9P2G1 1089 aa11.28□□□□□ -0.6
PTCD3-205ENST00000464541 CDC14CA4D256 554 aa11.27□□□□□ -0.61
PTCD3-205ENST00000464541 VWA5B2Q8N398 1253 aa11.27□□□□□ -0.61
PTCD3-205ENST00000464541 WFS1O76024 890 aa11.26□□□□□ -0.61
PTCD3-205ENST00000464541 SAMD5Q5TGI4 173 aa11.26□□□□□ -0.61
PTCD3-205ENST00000464541 NGLY1Q96IV0 654 aa11.26□□□□□ -0.61
PTCD3-205ENST00000464541 QTRT2Q9H974 415 aaKnown RBP11.26□□□□□ -0.61
PTCD3-205ENST00000464541 NEUROD4Q9HD90 331 aa11.26□□□□□ -0.61
PTCD3-205ENST00000464541 MTMR7Q9Y216 660 aa11.26□□□□□ -0.61
PTCD3-205ENST00000464541 GJA3Q9Y6H8 435 aa11.26□□□□□ -0.61
PTCD3-205ENST00000464541 TREML4Q6UXN2 200 aa11.25□□□□□ -0.61
PTCD3-205ENST00000464541 TRERF1Q96PN7 1200 aa11.25□□□□□ -0.61
PTCD3-205ENST00000464541 CARNS1A5YM72 827 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms