RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 AEBP2Q6ZN18 517 aaPredicted RBP31.64■■■□□ 2.66
PTCD3-205ENST00000464541 CHIC1Q5VXU3 224 aa31.11■■■□□ 2.57
PTCD3-205ENST00000464541 PHF23Q9BUL5 403 aaPredicted RBP27.29■■□□□ 1.96
PTCD3-205ENST00000464541 SENP3Q9H4L4 574 aaPredicted RBP26.97■■□□□ 1.91
PTCD3-205ENST00000464541 PLPPR3Q6T4P5 718 aa25.35■■□□□ 1.65
PTCD3-205ENST00000464541 FOXD1Q16676 465 aa24.91■■□□□ 1.58
PTCD3-205ENST00000464541 PPP6R1Q9UPN7 881 aa24.01■■□□□ 1.43
PTCD3-205ENST00000464541 ADRA2BP18089 450 aa24■■□□□ 1.43
PTCD3-205ENST00000464541 PIAS4Q8N2W9 510 aaPredicted RBP23.54■■□□□ 1.36
PTCD3-205ENST00000464541 MSH5O43196 834 aa23.05■■□□□ 1.28
PTCD3-205ENST00000464541 PPP4R3CPQ6ZMV5 832 aa22.29■■□□□ 1.16
PTCD3-205ENST00000464541 SCAF1Q9H7N4 1312 aaKnown RBP22.12■■□□□ 1.13
PTCD3-205ENST00000464541 KCNA4P22459 653 aa21.85■■□□□ 1.09
PTCD3-205ENST00000464541 NCBP3Q53F19 620 aaKnown RBP21.83■■□□□ 1.09
PTCD3-205ENST00000464541 MAPK8IP2Q13387 824 aaPredicted RBP21.7■■□□□ 1.06
PTCD3-205ENST00000464541 CNKSR2Q8WXI2 1034 aa21.7■■□□□ 1.06
PTCD3-205ENST00000464541 DMRT2Q9Y5R5 561 aa21.53■■□□□ 1.04
PTCD3-205ENST00000464541 NPM3O75607 178 aaKnown RBP21.41■■□□□ 1.02
PTCD3-205ENST00000464541 RNF216Q9NWF9 866 aaPredicted RBP21.25■□□□□ 0.99
PTCD3-205ENST00000464541 HOXD11P31277 338 aaPredicted RBP21.13■□□□□ 0.97
PTCD3-205ENST00000464541 DNAJC5BQ9UF47 199 aa20.95■□□□□ 0.94
PTCD3-205ENST00000464541 SLC4A1APQ9BWU0 796 aaKnown RBP20.87■□□□□ 0.93
PTCD3-205ENST00000464541 POTEDQ86YR6 584 aa20.69■□□□□ 0.9
PTCD3-205ENST00000464541 DCAF8L1A6NGE4 600 aa20.48■□□□□ 0.87
PTCD3-205ENST00000464541 EHMT2Q96KQ7 1210 aa20.3■□□□□ 0.84
PTCD3-205ENST00000464541 SLC4A2P04920 1241 aa20.17■□□□□ 0.82
PTCD3-205ENST00000464541 FOXD4L1Q9NU39 408 aa20.16■□□□□ 0.82
PTCD3-205ENST00000464541 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.1■□□□□ 0.812e-6■□□□□ 8.6
PTCD3-205ENST00000464541 ZBTB22O15209 634 aa20.08■□□□□ 0.81
PTCD3-205ENST00000464541 CSRNP3Q8WYN3 585 aa20.08■□□□□ 0.81
PTCD3-205ENST00000464541 MYCNP04198 464 aaPredicted RBP19.85■□□□□ 0.77
PTCD3-205ENST00000464541 U3KPZ7 1027 aaPredicted RBP19.76■□□□□ 0.75
PTCD3-205ENST00000464541 RNF39Q9H2S5 420 aa19.71■□□□□ 0.75
PTCD3-205ENST00000464541 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.69■□□□□ 0.74
PTCD3-205ENST00000464541 HNRNPUL2Q1KMD3 747 aaKnown RBP19.69■□□□□ 0.74
PTCD3-205ENST00000464541 SAMD1Q6SPF0 538 aaPredicted RBP19.6■□□□□ 0.73
PTCD3-205ENST00000464541 C1QBPQ07021 282 aaKnown RBP19.54■□□□□ 0.72
PTCD3-205ENST00000464541 ATXN8OSP0DMR3 200 aa19.52■□□□□ 0.72
PTCD3-205ENST00000464541 APLP2Q06481 763 aa19.49■□□□□ 0.71
PTCD3-205ENST00000464541 ATF5Q9Y2D1 282 aaPredicted RBP19.17■□□□□ 0.66
PTCD3-205ENST00000464541 SPINK5Q9NQ38 1064 aaPredicted RBP19.13■□□□□ 0.65
PTCD3-205ENST00000464541 ZNF219Q9P2Y4 722 aaPredicted RBP19.12■□□□□ 0.65
PTCD3-205ENST00000464541 CAPN15O75808 1086 aa19.08■□□□□ 0.64
PTCD3-205ENST00000464541 CACNB1Q02641 598 aaPredicted RBP19.08■□□□□ 0.64
PTCD3-205ENST00000464541 TRHP20396 242 aaPredicted RBP19■□□□□ 0.63
PTCD3-205ENST00000464541 DSG3P32926 999 aa18.77■□□□□ 0.6
PTCD3-205ENST00000464541 POLA2Q14181 598 aa18.74■□□□□ 0.59
PTCD3-205ENST00000464541 ABCB7O75027 752 aa18.68■□□□□ 0.58
PTCD3-205ENST00000464541 ZBTB12Q9Y330 459 aaPredicted RBP18.59■□□□□ 0.57
PTCD3-205ENST00000464541 FBLN2P98095 1184 aa18.5■□□□□ 0.55
PTCD3-205ENST00000464541 MKRN4PQ13434 485 aaPredicted RBP18.38■□□□□ 0.53
PTCD3-205ENST00000464541 FKBP8Q14318 412 aa18.15■□□□□ 0.5
PTCD3-205ENST00000464541 OSCARQ8IYS5 282 aa18.09■□□□□ 0.49
PTCD3-205ENST00000464541 SPDYE4A6NLX3 237 aa18.07■□□□□ 0.48
PTCD3-205ENST00000464541 SPDYE2BA6NHP3 402 aa18.05■□□□□ 0.48
PTCD3-205ENST00000464541 SPDYE6P0CI01 402 aa18.05■□□□□ 0.48
PTCD3-205ENST00000464541 SPDYE2Q495Y8 402 aa18.05■□□□□ 0.48
PTCD3-205ENST00000464541 RBM42Q9BTD8 480 aaKnown RBP17.98■□□□□ 0.47
PTCD3-205ENST00000464541 ZNF692Q9BU19 519 aaPredicted RBP17.93■□□□□ 0.46
PTCD3-205ENST00000464541 SSUH2Q9Y2M2 353 aa17.9■□□□□ 0.46
PTCD3-205ENST00000464541 PROM2Q8N271 834 aa17.84■□□□□ 0.45
PTCD3-205ENST00000464541 AKT1S1Q96B36 256 aa17.75■□□□□ 0.43
PTCD3-205ENST00000464541 PABPN1Q86U42 306 aaKnown RBP eCLIP17.68■□□□□ 0.42
PTCD3-205ENST00000464541 FBXO3Q9UK99 471 aa17.6■□□□□ 0.41
PTCD3-205ENST00000464541 REM2Q8IYK8 340 aaPredicted RBP17.52■□□□□ 0.4
PTCD3-205ENST00000464541 STAG3Q9UJ98 1225 aa17.52■□□□□ 0.4
PTCD3-205ENST00000464541 SPDYE1Q8NFV5 336 aaPredicted RBP17.48■□□□□ 0.39
PTCD3-205ENST00000464541 PITPNM1O00562 1244 aa17.3■□□□□ 0.36
PTCD3-205ENST00000464541 CLEC11AQ9Y240 323 aa17.29■□□□□ 0.36
PTCD3-205ENST00000464541 VASPP50552 380 aaPredicted RBP17.28■□□□□ 0.36
PTCD3-205ENST00000464541 PRR29P0C7W0 189 aa17.21■□□□□ 0.35
PTCD3-205ENST00000464541 PLEKHG5O94827 1062 aa17.12■□□□□ 0.33
PTCD3-205ENST00000464541 CHRDL2Q6WN34 429 aa17.11■□□□□ 0.33
PTCD3-205ENST00000464541 PLCD3Q8N3E9 789 aa17.11■□□□□ 0.33
PTCD3-205ENST00000464541 MIER1Q8N108 512 aa17.1■□□□□ 0.33
PTCD3-205ENST00000464541 ZBTB47Q9UFB7 747 aaPredicted RBP17.03■□□□□ 0.32
PTCD3-205ENST00000464541 IFNLR1Q8IU57 520 aaPredicted RBP17.01■□□□□ 0.31
PTCD3-205ENST00000464541 FXR2P51116 673 aaKnown RBP eCLIP17■□□□□ 0.31
PTCD3-205ENST00000464541 CREBZFQ9NS37 354 aa17■□□□□ 0.31
PTCD3-205ENST00000464541 KLHL34Q8N239 644 aa16.93■□□□□ 0.3
PTCD3-205ENST00000464541 PIP4P2Q8N4L2 257 aa16.89■□□□□ 0.29
PTCD3-205ENST00000464541 PRKAR2AP13861 404 aaKnown RBP16.87■□□□□ 0.29
PTCD3-205ENST00000464541 SPOCK2Q92563 424 aa16.86■□□□□ 0.29
PTCD3-205ENST00000464541 MNX1P50219 401 aaPredicted RBP16.84■□□□□ 0.29
PTCD3-205ENST00000464541 AMER1Q5JTC6 1135 aaPredicted RBP16.82■□□□□ 0.28
PTCD3-205ENST00000464541 CHADLQ6NUI6 762 aa16.82■□□□□ 0.28
PTCD3-205ENST00000464541 NPM1P06748 294 aaKnown RBP eCLIP16.8■□□□□ 0.28
PTCD3-205ENST00000464541 FARP1Q9Y4F1 1045 aaPredicted RBP16.77■□□□□ 0.28
PTCD3-205ENST00000464541 NUBP1P53384 320 aa16.68■□□□□ 0.26
PTCD3-205ENST00000464541 RTN4Q9NQC3 1192 aaKnown RBP16.65■□□□□ 0.26
PTCD3-205ENST00000464541 GSE1Q14687 1217 aa16.59■□□□□ 0.25
PTCD3-205ENST00000464541 FAM212AQ96EL1 285 aa16.58■□□□□ 0.24
PTCD3-205ENST00000464541 RASEFQ8IZ41 740 aa16.54■□□□□ 0.24
PTCD3-205ENST00000464541 TRIM41Q8WV44 630 aa16.51■□□□□ 0.23
PTCD3-205ENST00000464541 CIZ1Q9ULV3 898 aaPredicted RBP16.51■□□□□ 0.23
PTCD3-205ENST00000464541 DCAF8Q5TAQ9 597 aa16.5■□□□□ 0.23
PTCD3-205ENST00000464541 PKD2Q13563 968 aa16.49■□□□□ 0.23
PTCD3-205ENST00000464541 PAK3O75914 559 aaPredicted RBP16.48■□□□□ 0.23
PTCD3-205ENST00000464541 POTEHQ6S545 545 aa16.44■□□□□ 0.22
PTCD3-205ENST00000464541 C19orf67A6NJJ6 358 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms