RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	MCM4	P33991	863 aa		10.96	□□□□□ -0.65
SYNE1-215	ENST00000460912	CABLES1	Q8TDN4	633 aa		10.96	□□□□□ -0.65
SYNE1-215	ENST00000460912	OTUD7A	Q8TE49	926 aa	Predicted RBP	10.96	□□□□□ -0.65
SYNE1-215	ENST00000460912	MEIS3	Q99687	375 aa		10.96	□□□□□ -0.65
SYNE1-215	ENST00000460912	TOM1	O60784	492 aa		10.96	□□□□□ -0.66
SYNE1-215	ENST00000460912	C14orf37	Q86TY3	774 aa		10.96	□□□□□ -0.66
SYNE1-215	ENST00000460912	ANKRD24	Q8TF21	1146 aa		10.95	□□□□□ -0.66
SYNE1-215	ENST00000460912	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.95	□□□□□ -0.66
SYNE1-215	ENST00000460912	C16orf71	Q8IYS4	520 aa	Predicted RBP	10.95	□□□□□ -0.66
SYNE1-215	ENST00000460912	C4A	P0C0L4	1744 aa		10.95	□□□□□ -0.66
SYNE1-215	ENST00000460912	C4B	P0C0L5	1744 aa		10.95	□□□□□ -0.66
SYNE1-215	ENST00000460912	STAP2	Q9UGK3	403 aa		10.95	□□□□□ -0.66
SYNE1-215	ENST00000460912	CARD10	Q9BWT7	1032 aa		10.94	□□□□□ -0.66
SYNE1-215	ENST00000460912	AFDN	P55196	1824 aa	Known RBP	10.94	□□□□□ -0.66
SYNE1-215	ENST00000460912	MFAP1	P55081	439 aa	Known RBP	10.94	□□□□□ -0.66
SYNE1-215	ENST00000460912	CHMP5	Q9NZZ3	219 aa		10.94	□□□□□ -0.66
SYNE1-215	ENST00000460912	SCN7A	Q01118	1682 aa		10.94	□□□□□ -0.66
SYNE1-215	ENST00000460912	ONECUT3	O60422	494 aa	Predicted RBP	10.93	□□□□□ -0.66
SYNE1-215	ENST00000460912	POLA2	Q14181	598 aa		10.93	□□□□□ -0.66
SYNE1-215	ENST00000460912	ANKRD45	Q5TZF3	282 aa		10.93	□□□□□ -0.66
SYNE1-215	ENST00000460912	USP42	Q9H9J4	1324 aa	Known RBP	10.93	□□□□□ -0.66
SYNE1-215	ENST00000460912	BRPF3	Q9ULD4	1205 aa		10.93	□□□□□ -0.66
SYNE1-215	ENST00000460912		A0A1B0GUL6	1792 aa		10.93	□□□□□ -0.66
SYNE1-215	ENST00000460912	SPATA31A5	Q5VU36	1347 aa		10.92	□□□□□ -0.66
SYNE1-215	ENST00000460912	SPATA31A7	Q8IWB4	1347 aa		10.92	□□□□□ -0.66
SYNE1-215	ENST00000460912	ELL2	O00472	640 aa	Predicted RBP	10.92	□□□□□ -0.66
SYNE1-215	ENST00000460912	CDC45	O75419	566 aa		10.92	□□□□□ -0.66
SYNE1-215	ENST00000460912	SPATA31A1	Q5TZJ5	1347 aa		10.92	□□□□□ -0.66
SYNE1-215	ENST00000460912	MYH15	Q9Y2K3	1946 aa		10.92	□□□□□ -0.66
SYNE1-215	ENST00000460912	ADCY9	O60503	1353 aa		10.92	□□□□□ -0.66
SYNE1-215	ENST00000460912	SDS	P20132	328 aa		10.91	□□□□□ -0.66
SYNE1-215	ENST00000460912	AOX1	Q06278	1338 aa		10.91	□□□□□ -0.66
SYNE1-215	ENST00000460912	GAS2L2	Q8NHY3	880 aa		10.91	□□□□□ -0.66
SYNE1-215	ENST00000460912	UPF2	Q9HAU5	1272 aa	Known RBP	10.91	□□□□□ -0.66
SYNE1-215	ENST00000460912	UBR3	Q6ZT12	1888 aa		10.91	□□□□□ -0.66
SYNE1-215	ENST00000460912	AEBP2	Q6ZN18	517 aa	Predicted RBP	10.91	□□□□□ -0.66
SYNE1-215	ENST00000460912	RBM42	Q9BTD8	480 aa	Known RBP	10.91	□□□□□ -0.66
SYNE1-215	ENST00000460912	LAMA4	Q16363	1823 aa		10.9	□□□□□ -0.66
SYNE1-215	ENST00000460912	CCT4	P50991	539 aa	Known RBP	10.9	□□□□□ -0.66
SYNE1-215	ENST00000460912	HAP1	P54257	671 aa	Predicted RBP	10.9	□□□□□ -0.66
SYNE1-215	ENST00000460912	BARGIN	Q6ZT62	677 aa		10.9	□□□□□ -0.66
SYNE1-215	ENST00000460912	HOXB7	P09629	217 aa		10.9	□□□□□ -0.66
SYNE1-215	ENST00000460912	SLK	Q9H2G2	1235 aa	Predicted RBP	10.9	□□□□□ -0.66
SYNE1-215	ENST00000460912	TNPO1	Q92973	898 aa	Known RBP	10.9	□□□□□ -0.66
SYNE1-215	ENST00000460912	MYH14	Q7Z406	1995 aa	Known RBP	10.89	□□□□□ -0.67
SYNE1-215	ENST00000460912	GNAT3	A8MTJ3	354 aa		10.89	□□□□□ -0.67
SYNE1-215	ENST00000460912	SLC4A2	P04920	1241 aa		10.89	□□□□□ -0.67
SYNE1-215	ENST00000460912	USP44	Q9H0E7	712 aa		10.89	□□□□□ -0.67
SYNE1-215	ENST00000460912	MIS18A	Q9NYP9	233 aa		10.89	□□□□□ -0.67
SYNE1-215	ENST00000460912		K7ELQ4	463 aa	Predicted RBP	10.89	□□□□□ -0.67
SYNE1-215	ENST00000460912	HSPA1L	P34931	641 aa		10.89	□□□□□ -0.67
SYNE1-215	ENST00000460912	SSH3	Q8TE77	659 aa		10.89	□□□□□ -0.67
SYNE1-215	ENST00000460912	ZDHHC9	Q9Y397	364 aa		10.89	□□□□□ -0.67
SYNE1-215	ENST00000460912	UTY	O14607	1347 aa		10.89	□□□□□ -0.67
SYNE1-215	ENST00000460912	ATP8B2	P98198	1209 aa		10.89	□□□□□ -0.67
SYNE1-215	ENST00000460912	EP400	Q96L91	3159 aa		10.88	□□□□□ -0.67
SYNE1-215	ENST00000460912	PNMA6E	A0A0J9YXQ4	647 aa		10.88	□□□□□ -0.67
SYNE1-215	ENST00000460912	EPB41L2	O43491	1005 aa	Known RBP	10.88	□□□□□ -0.67
SYNE1-215	ENST00000460912	AMPH	P49418	695 aa		10.88	□□□□□ -0.67
SYNE1-215	ENST00000460912	PDE1A	P54750	535 aa		10.88	□□□□□ -0.67
SYNE1-215	ENST00000460912	EIF4A1	P60842	406 aa	Known RBP	10.88	□□□□□ -0.67
SYNE1-215	ENST00000460912	THRAP3	Q9Y2W1	955 aa	Known RBP	10.88	□□□□□ -0.67
SYNE1-215	ENST00000460912	XRCC6	P12956	609 aa	Known RBP eCLIP	10.88	□□□□□ -0.67
SYNE1-215	ENST00000460912	MTX1	Q13505	466 aa		10.88	□□□□□ -0.67
SYNE1-215	ENST00000460912	VSIG10	Q8N0Z9	540 aa		10.88	□□□□□ -0.67
SYNE1-215	ENST00000460912	FLII	Q13045	1269 aa		10.87	□□□□□ -0.67
SYNE1-215	ENST00000460912	LARP1	Q6PKG0	1096 aa	Known RBP	10.87	□□□□□ -0.67
SYNE1-215	ENST00000460912	LRP10	Q7Z4F1	713 aa		10.87	□□□□□ -0.67
SYNE1-215	ENST00000460912	NUP98	P52948	1817 aa		10.87	□□□□□ -0.67
SYNE1-215	ENST00000460912	CYP27B1	O15528	508 aa		10.87	□□□□□ -0.67
SYNE1-215	ENST00000460912	IL25	Q9H293	177 aa		10.87	□□□□□ -0.67
SYNE1-215	ENST00000460912	UBAP1L	F5GYI3	381 aa		10.87	□□□□□ -0.67
SYNE1-215	ENST00000460912	ZC3H6	P61129	1189 aa	Known RBP	10.87	□□□□□ -0.67
SYNE1-215	ENST00000460912	AKAP4	Q5JQC9	854 aa		10.87	□□□□□ -0.67
SYNE1-215	ENST00000460912	NRXN2	Q9P2S2	1712 aa		10.87	□□□□□ -0.67
SYNE1-215	ENST00000460912	COL15A1	P39059	1388 aa		10.86	□□□□□ -0.67
SYNE1-215	ENST00000460912	PHKG2	P15735	406 aa		10.86	□□□□□ -0.67
SYNE1-215	ENST00000460912	VPS72	Q15906	364 aa		10.86	□□□□□ -0.67
SYNE1-215	ENST00000460912		F6X3S4	739 aa		10.86	□□□□□ -0.67
SYNE1-215	ENST00000460912	SMARCA5	O60264	1052 aa	Predicted RBP	10.86	□□□□□ -0.67
SYNE1-215	ENST00000460912	CHRNA2	Q15822	529 aa		10.86	□□□□□ -0.67
SYNE1-215	ENST00000460912	PI4K2B	Q8TCG2	481 aa		10.86	□□□□□ -0.67
SYNE1-215	ENST00000460912	TSPYL4	Q9UJ04	414 aa		10.86	□□□□□ -0.67
SYNE1-215	ENST00000460912	TAF7	Q15545	349 aa	Predicted RBP	10.86	□□□□□ -0.67
SYNE1-215	ENST00000460912	SNRK	Q9NRH2	765 aa		10.86	□□□□□ -0.67
SYNE1-215	ENST00000460912	TCHH	Q07283	1943 aa		10.86	□□□□□ -0.67
SYNE1-215	ENST00000460912	CUL4A	Q13619	759 aa		10.85	□□□□□ -0.67
SYNE1-215	ENST00000460912	AMOT	Q4VCS5	1084 aa		10.85	□□□□□ -0.67
SYNE1-215	ENST00000460912	BEND3	Q5T5X7	828 aa		10.85	□□□□□ -0.67
SYNE1-215	ENST00000460912	USHBP1	Q8N6Y0	703 aa		10.85	□□□□□ -0.67
SYNE1-215	ENST00000460912	RABEP1	Q15276	862 aa		10.85	□□□□□ -0.67
SYNE1-215	ENST00000460912	KCNB2	Q92953	911 aa		10.85	□□□□□ -0.67
SYNE1-215	ENST00000460912	GAS2L3	Q86XJ1	694 aa		10.84	□□□□□ -0.67
SYNE1-215	ENST00000460912	TRAK2	O60296	914 aa		10.84	□□□□□ -0.67
SYNE1-215	ENST00000460912	PDIA6	Q15084	440 aa		10.84	□□□□□ -0.67
SYNE1-215	ENST00000460912	HSCB	Q8IWL3	235 aa		10.84	□□□□□ -0.67
SYNE1-215	ENST00000460912	FAM43A	Q8N2R8	423 aa		10.84	□□□□□ -0.67
SYNE1-215	ENST00000460912	ISY1	Q9ULR0	285 aa	Known RBP	10.84	□□□□□ -0.67
SYNE1-215	ENST00000460912	CCDC30	Q5VVM6	783 aa		10.83	□□□□□ -0.68
SYNE1-215	ENST00000460912	RNMT	O43148	476 aa	Known RBP	10.83	□□□□□ -0.68

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