RNA–Protein interactions for RNA: ENST00000458610.6

CD28-203, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 705 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-203ENST00000458610 UBR3Q6ZT12 1888 aa21.14■□□□□ 0.97
CD28-203ENST00000458610 APAF1O14727 1248 aa21.14■□□□□ 0.97
CD28-203ENST00000458610 ZPR1O75312 459 aa21.14■□□□□ 0.97
CD28-203ENST00000458610 SIPA1L3O60292 1781 aaPredicted RBP21.14■□□□□ 0.97
CD28-203ENST00000458610 TUBGCP6Q96RT7 1819 aa21.13■□□□□ 0.97
CD28-203ENST00000458610 COL5A3P25940 1745 aaPredicted RBP21.13■□□□□ 0.97
CD28-203ENST00000458610 SOS1Q07889 1333 aaPredicted RBP21.13■□□□□ 0.97
CD28-203ENST00000458610 CANXP27824 592 aaKnown RBP21.13■□□□□ 0.97
CD28-203ENST00000458610 TSPYL4Q9UJ04 414 aa21.13■□□□□ 0.97
CD28-203ENST00000458610 FHDC1Q9C0D6 1143 aaPredicted RBP21.12■□□□□ 0.97
CD28-203ENST00000458610 TRIM35Q9UPQ4 493 aa21.12■□□□□ 0.97
CD28-203ENST00000458610 ZBTB1Q9Y2K1 713 aa21.12■□□□□ 0.97
CD28-203ENST00000458610 UBR2Q8IWV8 1755 aa21.12■□□□□ 0.97
CD28-203ENST00000458610 TJP1Q07157 1748 aa21.12■□□□□ 0.97
CD28-203ENST00000458610 IL6STP40189 918 aaPredicted RBP21.11■□□□□ 0.97
CD28-203ENST00000458610 EIF4A1P60842 406 aaKnown RBP21.11■□□□□ 0.97
CD28-203ENST00000458610 SYT17Q9BSW7 474 aa21.11■□□□□ 0.97
CD28-203ENST00000458610 USP16Q9Y5T5 823 aa21.11■□□□□ 0.97
CD28-203ENST00000458610 DLG5Q8TDM6 1919 aa21.11■□□□□ 0.97
CD28-203ENST00000458610 EIF5P55010 431 aaKnown RBP21.1■□□□□ 0.97
CD28-203ENST00000458610 USP42Q9H9J4 1324 aaKnown RBP21.09■□□□□ 0.97
CD28-203ENST00000458610 GYS1P13807 737 aa21.09■□□□□ 0.97
CD28-203ENST00000458610 KLHL34Q8N239 644 aa21.09■□□□□ 0.97
CD28-203ENST00000458610 NARFQ9UHQ1 456 aa21.09■□□□□ 0.97
CD28-203ENST00000458610 CHL1O00533 1208 aa21.08■□□□□ 0.97
CD28-203ENST00000458610 GIGYF1O75420 1035 aaPredicted RBP21.08■□□□□ 0.97
CD28-203ENST00000458610 A1BGP04217 495 aa21.08■□□□□ 0.97
CD28-203ENST00000458610 NCBP3Q53F19 620 aaKnown RBP21.08■□□□□ 0.97
CD28-203ENST00000458610 LAS1LQ9Y4W2 734 aaKnown RBP21.08■□□□□ 0.97
CD28-203ENST00000458610 MYH14Q7Z406 1995 aaKnown RBP21.08■□□□□ 0.96
CD28-203ENST00000458610 COL15A1P39059 1388 aa21.08■□□□□ 0.96
CD28-203ENST00000458610 MMP10P09238 476 aa21.07■□□□□ 0.96
CD28-203ENST00000458610 CD2APQ9Y5K6 639 aa21.07■□□□□ 0.96
CD28-203ENST00000458610 PARP3Q9Y6F1 533 aa21.07■□□□□ 0.96
CD28-203ENST00000458610 USPL1Q5W0Q7 1092 aa21.06■□□□□ 0.96
CD28-203ENST00000458610 CFAP44Q96MT7 982 aa21.06■□□□□ 0.96
CD28-203ENST00000458610 SRP68Q9UHB9 627 aaKnown RBP21.06■□□□□ 0.96
CD28-203ENST00000458610 ZNF330Q9Y3S2 320 aaPredicted RBP21.06■□□□□ 0.96
CD28-203ENST00000458610 COL24A1Q17RW2 1714 aa21.05■□□□□ 0.96
CD28-203ENST00000458610 GNAI1P63096 354 aa21.05■□□□□ 0.96
CD28-203ENST00000458610 CCDC27Q2M243 656 aa21.05■□□□□ 0.96
CD28-203ENST00000458610 FAM9BQ8IZU0 186 aa21.05■□□□□ 0.96
CD28-203ENST00000458610 PRAMEF22A3QJZ6 481 aa21.04■□□□□ 0.96
CD28-203ENST00000458610 FKBP8Q14318 412 aa21.03■□□□□ 0.96
CD28-203ENST00000458610 NGEFQ8N5V2 710 aa21.03■□□□□ 0.96
CD28-203ENST00000458610 IFT57Q9NWB7 429 aa21.03■□□□□ 0.96
CD28-203ENST00000458610 TBC1D2BQ9UPU7 963 aa21.02■□□□□ 0.96
CD28-203ENST00000458610 ERBB4Q15303 1308 aa21.02■□□□□ 0.95
CD28-203ENST00000458610 CCER2I3L3R5 266 aa21.01■□□□□ 0.95
CD28-203ENST00000458610 DZIP3Q86Y13 1208 aaKnown RBP21.01■□□□□ 0.95
CD28-203ENST00000458610 TM4SF1P30408 202 aa21■□□□□ 0.95
CD28-203ENST00000458610 CHMP4AQ9BY43 222 aa21■□□□□ 0.95
CD28-203ENST00000458610 KDM3BQ7LBC6 1761 aa21■□□□□ 0.95
CD28-203ENST00000458610 NBPF26B4DH59 902 aa20.99■□□□□ 0.95
CD28-203ENST00000458610 RGL2O15211 777 aa20.99■□□□□ 0.95
CD28-203ENST00000458610 ZNF853P0CG23 659 aa20.99■□□□□ 0.95
CD28-203ENST00000458610 NBPF10Q6P3W6 841 aaKnown RBP20.99■□□□□ 0.95
CD28-203ENST00000458610 NBPF15Q8N660 670 aa20.99■□□□□ 0.95
CD28-203ENST00000458610 ZNF652Q9Y2D9 606 aa20.99■□□□□ 0.95
CD28-203ENST00000458610 HOXB7P09629 217 aa20.98■□□□□ 0.95
CD28-203ENST00000458610 EIF2S2P20042 333 aaKnown RBP20.98■□□□□ 0.95
CD28-203ENST00000458610 DIEXFQ68CQ4 756 aaKnown RBP20.98■□□□□ 0.95
CD28-203ENST00000458610 CLEC4GQ6UXB4 293 aa20.98■□□□□ 0.95
CD28-203ENST00000458610 WWC1Q8IX03 1113 aa20.98■□□□□ 0.95
CD28-203ENST00000458610 PIP4K2AP48426 406 aaPredicted RBP20.97■□□□□ 0.95
CD28-203ENST00000458610 MBIPQ9NS73 344 aa20.97■□□□□ 0.95
CD28-203ENST00000458610 CAMTA2O94983 1202 aa20.96■□□□□ 0.95
CD28-203ENST00000458610 TGFB2P61812 414 aa20.96■□□□□ 0.95
CD28-203ENST00000458610 NFIXQ14938 502 aa20.96■□□□□ 0.95
CD28-203ENST00000458610 BCL2L12Q9HB09 334 aa20.96■□□□□ 0.95
CD28-203ENST00000458610 POLRMTO00411 1230 aaKnown RBP20.95■□□□□ 0.94
CD28-203ENST00000458610 GPR162Q16538 588 aa20.95■□□□□ 0.94
CD28-203ENST00000458610 WDR63Q8IWG1 891 aa20.95■□□□□ 0.94
CD28-203ENST00000458610 IL16Q14005 1332 aa20.95■□□□□ 0.94
CD28-203ENST00000458610 C4AP0C0L4 1744 aa20.95■□□□□ 0.94
CD28-203ENST00000458610 SRCAPQ6ZRS2 3230 aa20.94■□□□□ 0.94
CD28-203ENST00000458610 SERPINB2P05120 415 aa20.94■□□□□ 0.94
CD28-203ENST00000458610 MYL6BP14649 208 aa20.94■□□□□ 0.94
CD28-203ENST00000458610 DDR1Q08345 913 aa20.94■□□□□ 0.94
CD28-203ENST00000458610 KIF6Q6ZMV9 814 aa20.94■□□□□ 0.94
CD28-203ENST00000458610 BICDL1Q6ZP65 573 aa20.94■□□□□ 0.94
CD28-203ENST00000458610 NLGN2Q8NFZ4 835 aa20.94■□□□□ 0.94
CD28-203ENST00000458610 SETDB2Q96T68 719 aa20.94■□□□□ 0.94
CD28-203ENST00000458610 ERVV-1B6SEH8 477 aa20.93■□□□□ 0.94
CD28-203ENST00000458610 DUSP27Q5VZP5 1158 aa20.93■□□□□ 0.94
CD28-203ENST00000458610 TBC1D9BQ66K14 1250 aa20.92■□□□□ 0.94
CD28-203ENST00000458610 SALL2Q9Y467 1007 aaPredicted RBP20.92■□□□□ 0.94
CD28-203ENST00000458610 HDGFL1Q5TGJ6 251 aa20.91■□□□□ 0.94
CD28-203ENST00000458610 PELP1Q8IZL8 1130 aaKnown RBP20.91■□□□□ 0.94
CD28-203ENST00000458610 DDX21Q9NR30 783 aaKnown RBP eCLIP20.91■□□□□ 0.94
CD28-203ENST00000458610 NPHP1O15259 732 aa20.9■□□□□ 0.94
CD28-203ENST00000458610 GRIN3BO60391 1043 aa20.9■□□□□ 0.94
CD28-203ENST00000458610 DBF4Q9UBU7 674 aaPredicted RBP20.9■□□□□ 0.94
CD28-203ENST00000458610 LAMB4A4D0S4 1761 aa20.9■□□□□ 0.94
CD28-203ENST00000458610 CARMIL3Q8ND23 1372 aa20.89■□□□□ 0.93
CD28-203ENST00000458610 MAP3K15Q6ZN16 1313 aa20.89■□□□□ 0.93
CD28-203ENST00000458610 SENP3-EIF4A1A0A087X0R7 540 aa20.89■□□□□ 0.93
CD28-203ENST00000458610 PDIA6Q15084 440 aa20.89■□□□□ 0.93
CD28-203ENST00000458610 KRT24Q2M2I5 525 aa20.89■□□□□ 0.93
CD28-203ENST00000458610 NECTIN2Q92692 538 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms