RNA–Protein interactions for RNA: ENST00000458516.5

TRIM39-211, Transcript of tripartite motif containing 39, humanhuman

TSL 2

Gene TRIM39, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-211ENST00000458516 USP16Q9Y5T5 823 aa21.79■■□□□ 1.08
TRIM39-211ENST00000458516 UBR3Q6ZT12 1888 aa21.78■■□□□ 1.08
TRIM39-211ENST00000458516 TWISTNBQ3B726 338 aaPredicted RBP21.78■■□□□ 1.08
TRIM39-211ENST00000458516 SOS1Q07889 1333 aaPredicted RBP21.78■■□□□ 1.08
TRIM39-211ENST00000458516 CACNA1FO60840 1977 aa21.78■■□□□ 1.08
TRIM39-211ENST00000458516 CYP19A1P11511 503 aaPredicted RBP21.77■■□□□ 1.08
TRIM39-211ENST00000458516 TEX13AQ9BXU3 409 aaPredicted RBP21.77■■□□□ 1.08
TRIM39-211ENST00000458516 VAMP4O75379 141 aa21.75■■□□□ 1.07
TRIM39-211ENST00000458516 QSER1Q2KHR3 1735 aa21.74■■□□□ 1.07
TRIM39-211ENST00000458516 CNTNAP4Q9C0A0 1308 aa21.74■■□□□ 1.07
TRIM39-211ENST00000458516 STARD3NLO95772 234 aa21.73■■□□□ 1.07
TRIM39-211ENST00000458516 EIF2S2P20042 333 aaKnown RBP21.73■■□□□ 1.07
TRIM39-211ENST00000458516 CRKLP46109 303 aaKnown RBP21.73■■□□□ 1.07
TRIM39-211ENST00000458516 HDGFL1Q5TGJ6 251 aa21.73■■□□□ 1.07
TRIM39-211ENST00000458516 NECTIN2Q92692 538 aa21.72■■□□□ 1.07
TRIM39-211ENST00000458516 A1BGP04217 495 aa21.71■■□□□ 1.07
TRIM39-211ENST00000458516 RC3H1Q5TC82 1133 aaKnown RBP21.71■■□□□ 1.07
TRIM39-211ENST00000458516 INTS5Q6P9B9 1019 aaKnown RBP21.71■■□□□ 1.07
TRIM39-211ENST00000458516 CCDC87Q9NVE4 849 aa21.71■■□□□ 1.07
TRIM39-211ENST00000458516 ZBTB1Q9Y2K1 713 aa21.71■■□□□ 1.07
TRIM39-211ENST00000458516 C4AP0C0L4 1744 aa21.7■■□□□ 1.06
TRIM39-211ENST00000458516 CT47B1P0C2W7 299 aaPredicted RBP21.7■■□□□ 1.06
TRIM39-211ENST00000458516 ZNF827Q17R98 1081 aa21.7■■□□□ 1.06
TRIM39-211ENST00000458516 ANO8Q9HCE9 1232 aaPredicted RBP21.7■■□□□ 1.06
TRIM39-211ENST00000458516 ERBB4Q15303 1308 aa21.7■■□□□ 1.06
TRIM39-211ENST00000458516 NBPF26B4DH59 902 aa21.69■■□□□ 1.06
TRIM39-211ENST00000458516 HMGB2P26583 209 aaKnown RBP21.69■■□□□ 1.06
TRIM39-211ENST00000458516 PDIA6Q15084 440 aa21.69■■□□□ 1.06
TRIM39-211ENST00000458516 NBPF14Q5TI25 921 aa21.69■■□□□ 1.06
TRIM39-211ENST00000458516 NBPF10Q6P3W6 841 aaKnown RBP21.69■■□□□ 1.06
TRIM39-211ENST00000458516 NBPF15Q8N660 670 aa21.69■■□□□ 1.06
TRIM39-211ENST00000458516 AKT1S1Q96B36 256 aa21.69■■□□□ 1.06
TRIM39-211ENST00000458516 PIP4K2AP48426 406 aaPredicted RBP21.68■■□□□ 1.06
TRIM39-211ENST00000458516 CCDC30Q5VVM6 783 aa21.68■■□□□ 1.06
TRIM39-211ENST00000458516 CHPF2Q9P2E5 772 aa21.68■■□□□ 1.06
TRIM39-211ENST00000458516 PROSER3Q2NL68 480 aa21.67■■□□□ 1.06
TRIM39-211ENST00000458516 AK7Q96M32 723 aa21.67■■□□□ 1.06
TRIM39-211ENST00000458516 TCERG1O14776 1098 aaKnown RBP21.66■■□□□ 1.06
TRIM39-211ENST00000458516 GNPATO15228 680 aa21.66■■□□□ 1.06
TRIM39-211ENST00000458516 ANXA1P04083 346 aa21.66■■□□□ 1.06
TRIM39-211ENST00000458516 CANXP27824 592 aaKnown RBP21.66■■□□□ 1.06
TRIM39-211ENST00000458516 LRP10Q7Z4F1 713 aa21.66■■□□□ 1.06
TRIM39-211ENST00000458516 AMIGO3Q86WK7 504 aa21.66■■□□□ 1.06
TRIM39-211ENST00000458516 ZNF428Q96B54 188 aa21.66■■□□□ 1.06
TRIM39-211ENST00000458516 CHMP4AQ9BY43 222 aa21.66■■□□□ 1.06
TRIM39-211ENST00000458516 DDX21Q9NR30 783 aaKnown RBP eCLIP21.66■■□□□ 1.06
TRIM39-211ENST00000458516 RPS6KA4O75676 772 aa21.65■■□□□ 1.06
TRIM39-211ENST00000458516 DBF4Q9UBU7 674 aaPredicted RBP21.65■■□□□ 1.06
TRIM39-211ENST00000458516 BCORQ6W2J9 1755 aa21.65■■□□□ 1.06
TRIM39-211ENST00000458516 IL6STP40189 918 aaPredicted RBP21.64■■□□□ 1.05
TRIM39-211ENST00000458516 COL15A1P39059 1388 aa21.63■■□□□ 1.05
TRIM39-211ENST00000458516 SCN7AQ01118 1682 aa21.63■■□□□ 1.05
TRIM39-211ENST00000458516 MYL6BP14649 208 aa21.63■■□□□ 1.05
TRIM39-211ENST00000458516 RARSP54136 660 aaKnown RBP21.63■■□□□ 1.05
TRIM39-211ENST00000458516 EIF5P55010 431 aaKnown RBP21.63■■□□□ 1.05
TRIM39-211ENST00000458516 SLC15A2Q16348 729 aa21.63■■□□□ 1.05
TRIM39-211ENST00000458516 ALDH1L2Q3SY69 923 aa21.63■■□□□ 1.05
TRIM39-211ENST00000458516 SSH1Q8WYL5 1049 aa21.63■■□□□ 1.05
TRIM39-211ENST00000458516 STK31Q9BXU1 1019 aa21.63■■□□□ 1.05
TRIM39-211ENST00000458516 STK32BQ9NY57 414 aa21.63■■□□□ 1.05
TRIM39-211ENST00000458516 SMIM5Q71RC9 77 aa21.62■■□□□ 1.05
TRIM39-211ENST00000458516 RTCBQ9Y3I0 505 aaKnown RBP21.62■■□□□ 1.05
TRIM39-211ENST00000458516 MRPL50Q8N5N7 158 aaKnown RBP21.61■■□□□ 1.05
TRIM39-211ENST00000458516 BCL2L13Q9BXK5 485 aa21.61■■□□□ 1.05
TRIM39-211ENST00000458516 TFCP2L1Q9NZI6 479 aa21.61■■□□□ 1.05
TRIM39-211ENST00000458516 ARFGEF2Q9Y6D5 1785 aa21.61■■□□□ 1.05
TRIM39-211ENST00000458516 SLC4A2P04920 1241 aa21.6■■□□□ 1.05
TRIM39-211ENST00000458516 SSFA2P28290 1259 aa21.6■■□□□ 1.05
TRIM39-211ENST00000458516 HYPKQ9NX55 129 aa21.6■■□□□ 1.05
TRIM39-211ENST00000458516 ZNF330Q9Y3S2 320 aaPredicted RBP21.6■■□□□ 1.05
TRIM39-211ENST00000458516 NUP98P52948 1817 aa21.59■■□□□ 1.05
TRIM39-211ENST00000458516 PNPLA7Q6ZV29 1317 aa21.59■■□□□ 1.05
TRIM39-211ENST00000458516 CASZ1Q86V15 1759 aa21.59■■□□□ 1.05
TRIM39-211ENST00000458516 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.59■■□□□ 1.05
TRIM39-211ENST00000458516 PHF14O94880 888 aa21.59■■□□□ 1.05
TRIM39-211ENST00000458516 G2E3Q7L622 706 aa21.59■■□□□ 1.05
TRIM39-211ENST00000458516 PHAXQ9H814 394 aaKnown RBP21.59■■□□□ 1.05
TRIM39-211ENST00000458516 SMC4Q9NTJ3 1288 aa21.59■■□□□ 1.05
TRIM39-211ENST00000458516 ADRA2BP18089 450 aa21.58■■□□□ 1.05
TRIM39-211ENST00000458516 XAGE3Q8WTP9 111 aa21.58■■□□□ 1.05
TRIM39-211ENST00000458516 BRPF1P55201 1214 aaPredicted RBP21.57■■□□□ 1.04
TRIM39-211ENST00000458516 RCAN3Q9UKA8 241 aa21.57■■□□□ 1.04
TRIM39-211ENST00000458516 ANKRD36CQ5JPF3 1778 aa21.56■■□□□ 1.04
TRIM39-211ENST00000458516 BCAR3O75815 825 aa21.56■■□□□ 1.04
TRIM39-211ENST00000458516 TRAPPC3LQ5T215 181 aa21.56■■□□□ 1.04
TRIM39-211ENST00000458516 TTLL7Q6ZT98 887 aa21.56■■□□□ 1.04
TRIM39-211ENST00000458516 COPS6Q7L5N1 327 aa21.56■■□□□ 1.04
TRIM39-211ENST00000458516 ARHGEF1Q92888 912 aaKnown RBP21.56■■□□□ 1.04
TRIM39-211ENST00000458516 A0A087WZG4 1122 aa21.55■■□□□ 1.04
TRIM39-211ENST00000458516 AIMP1Q12904 312 aaKnown RBP21.55■■□□□ 1.04
TRIM39-211ENST00000458516 FLIIQ13045 1269 aa21.55■■□□□ 1.04
TRIM39-211ENST00000458516 DZIP3Q86Y13 1208 aaKnown RBP21.55■■□□□ 1.04
TRIM39-211ENST00000458516 COL23A1Q86Y22 540 aaPredicted RBP21.55■■□□□ 1.04
TRIM39-211ENST00000458516 FLAD1Q8NFF5 587 aa21.55■■□□□ 1.04
TRIM39-211ENST00000458516 NPM2Q86SE8 214 aaKnown RBP21.54■■□□□ 1.04
TRIM39-211ENST00000458516 TBC1D2BQ9UPU7 963 aa21.54■■□□□ 1.04
TRIM39-211ENST00000458516 USP42Q9H9J4 1324 aaKnown RBP21.54■■□□□ 1.04
TRIM39-211ENST00000458516 N4BP2Q86UW6 1770 aaPredicted RBP21.53■■□□□ 1.04
TRIM39-211ENST00000458516 CAMTA2O94983 1202 aa21.53■■□□□ 1.04
TRIM39-211ENST00000458516 MAP3K15Q6ZN16 1313 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms