RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 COL23A1Q86Y22 540 aaPredicted RBP10.63□□□□□ -0.71
VPS50-204ENST00000438395 EYA1Q99502 592 aa10.63□□□□□ -0.71
VPS50-204ENST00000438395 SHANK3Q9BYB0 1731 aa10.62□□□□□ -0.71
VPS50-204ENST00000438395 GRIN3BO60391 1043 aa10.62□□□□□ -0.71
VPS50-204ENST00000438395 IFNL2Q8IZJ0 200 aa10.62□□□□□ -0.71
VPS50-204ENST00000438395 PIGBQ92521 554 aa10.62□□□□□ -0.71
VPS50-204ENST00000438395 PLSCR2Q9NRY7 297 aa10.62□□□□□ -0.71
VPS50-204ENST00000438395 POLKQ9UBT6 870 aa10.62□□□□□ -0.71
VPS50-204ENST00000438395 LY75O60449 1722 aa10.61□□□□□ -0.71
VPS50-204ENST00000438395 QSER1Q2KHR3 1735 aa10.61□□□□□ -0.71
VPS50-204ENST00000438395 NCAPD2Q15021 1401 aa10.61□□□□□ -0.71
VPS50-204ENST00000438395 HSPA5P11021 654 aaKnown RBP10.61□□□□□ -0.71
VPS50-204ENST00000438395 NLGN2Q8NFZ4 835 aa10.61□□□□□ -0.71
VPS50-204ENST00000438395 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.6□□□□□ -0.71
VPS50-204ENST00000438395 LOC102724428A0A0B4J2F2 783 aa10.6□□□□□ -0.71
VPS50-204ENST00000438395 HSP90AB1P08238 724 aaKnown RBP10.6□□□□□ -0.71
VPS50-204ENST00000438395 PHKG2P15735 406 aa10.6□□□□□ -0.71
VPS50-204ENST00000438395 SIK1P57059 783 aa10.6□□□□□ -0.71
VPS50-204ENST00000438395 EIF4A2Q14240 407 aaKnown RBP10.6□□□□□ -0.71
VPS50-204ENST00000438395 NKX1-1Q15270 411 aaPredicted RBP10.6□□□□□ -0.71
VPS50-204ENST00000438395 MORC1Q86VD1 984 aa10.6□□□□□ -0.71
VPS50-204ENST00000438395 PANK3Q9H999 370 aa10.6□□□□□ -0.71
VPS50-204ENST00000438395 PLEKHG2Q9H7P9 1386 aa10.6□□□□□ -0.71
VPS50-204ENST00000438395 GNPATO15228 680 aa10.59□□□□□ -0.71
VPS50-204ENST00000438395 PPP1R37O75864 691 aa10.59□□□□□ -0.71
VPS50-204ENST00000438395 HOXB3P14651 431 aaPredicted RBP10.59□□□□□ -0.71
VPS50-204ENST00000438395 SSFA2P28290 1259 aa10.59□□□□□ -0.71
VPS50-204ENST00000438395 KNSTRNQ9Y448 316 aa10.59□□□□□ -0.71
VPS50-204ENST00000438395 CD2APQ9Y5K6 639 aa10.59□□□□□ -0.71
VPS50-204ENST00000438395 C5P01031 1676 aa10.59□□□□□ -0.71
VPS50-204ENST00000438395 PKD1L3Q7Z443 1732 aa10.58□□□□□ -0.72
VPS50-204ENST00000438395 UTRNP46939 3433 aa10.58□□□□□ -0.72
VPS50-204ENST00000438395 GIGYF1O75420 1035 aaPredicted RBP10.58□□□□□ -0.72
VPS50-204ENST00000438395 ATP6V1AP38606 617 aa10.58□□□□□ -0.72
VPS50-204ENST00000438395 PLEKHO1Q53GL0 409 aaPredicted RBP10.58□□□□□ -0.72
VPS50-204ENST00000438395 C1orf141Q5JVX7 400 aa10.58□□□□□ -0.72
VPS50-204ENST00000438395 ZNF530Q6P9A1 599 aaPredicted RBP10.58□□□□□ -0.72
VPS50-204ENST00000438395 ANKRD26Q9UPS8 1709 aa10.58□□□□□ -0.72
VPS50-204ENST00000438395 TUBGCP6Q96RT7 1819 aa10.57□□□□□ -0.72
VPS50-204ENST00000438395 SENP3-EIF4A1A0A087X0R7 540 aa10.57□□□□□ -0.72
VPS50-204ENST00000438395 AMOTQ4VCS5 1084 aa10.57□□□□□ -0.72
VPS50-204ENST00000438395 HS6ST3Q8IZP7 471 aa10.57□□□□□ -0.72
VPS50-204ENST00000438395 DCAF5Q96JK2 942 aa10.57□□□□□ -0.72
VPS50-204ENST00000438395 ASAP1Q9ULH1 1129 aa10.57□□□□□ -0.72
VPS50-204ENST00000438395 IGSF1Q8N6C5 1336 aa10.57□□□□□ -0.72
VPS50-204ENST00000438395 C4BP0C0L5 1744 aa10.56□□□□□ -0.72
VPS50-204ENST00000438395 ERVV-2B6SEH9 535 aa10.56□□□□□ -0.72
VPS50-204ENST00000438395 YBX3P16989 372 aaKnown RBP eCLIP10.56□□□□□ -0.72
VPS50-204ENST00000438395 CABP4P57796 275 aa10.56□□□□□ -0.72
VPS50-204ENST00000438395 LINC00116Q8NCU8 138 aa10.56□□□□□ -0.72
VPS50-204ENST00000438395 TOGARAM1Q9Y4F4 1720 aa10.55□□□□□ -0.72
VPS50-204ENST00000438395 GOLGB1Q14789 3259 aaKnown RBP10.55□□□□□ -0.72
VPS50-204ENST00000438395 C1QTNF8P60827 252 aa10.55□□□□□ -0.72
VPS50-204ENST00000438395 CDAN1Q8IWY9 1227 aa10.55□□□□□ -0.72
VPS50-204ENST00000438395 ATG3Q9NT62 314 aa10.55□□□□□ -0.72
VPS50-204ENST00000438395 RTCBQ9Y3I0 505 aaKnown RBP10.55□□□□□ -0.72
VPS50-204ENST00000438395 MTHFSP49914 203 aa10.54□□□□□ -0.72
VPS50-204ENST00000438395 ITPK1Q13572 414 aa10.54□□□□□ -0.72
VPS50-204ENST00000438395 CHD4Q14839 1912 aa10.54□□□□□ -0.72
VPS50-204ENST00000438395 MMP10P09238 476 aa10.53□□□□□ -0.72
VPS50-204ENST00000438395 TRAPPC3LQ5T215 181 aa10.53□□□□□ -0.72
VPS50-204ENST00000438395 SULT6B1Q6IMI4 303 aa10.53□□□□□ -0.72
VPS50-204ENST00000438395 SMIM5Q71RC9 77 aa10.53□□□□□ -0.72
VPS50-204ENST00000438395 AMIGO3Q86WK7 504 aa10.53□□□□□ -0.72
VPS50-204ENST00000438395 WWC3Q9ULE0 1092 aa10.53□□□□□ -0.72
VPS50-204ENST00000438395 COL24A1Q17RW2 1714 aa10.53□□□□□ -0.72
VPS50-204ENST00000438395 PTCD1O75127 700 aaKnown RBP10.52□□□□□ -0.73
VPS50-204ENST00000438395 RFC4P35249 363 aa10.52□□□□□ -0.73
VPS50-204ENST00000438395 EMP3P54852 163 aa10.52□□□□□ -0.73
VPS50-204ENST00000438395 AEBP1Q8IUX7 1158 aa10.52□□□□□ -0.73
VPS50-204ENST00000438395 NLGN1Q8N2Q7 840 aa10.52□□□□□ -0.73
VPS50-204ENST00000438395 GPBP1L1Q9HC44 474 aaPredicted RBP10.52□□□□□ -0.73
VPS50-204ENST00000438395 KDRP35968 1356 aa10.52□□□□□ -0.73
VPS50-204ENST00000438395 MAP2P11137 1827 aaKnown RBP10.51□□□□□ -0.73
VPS50-204ENST00000438395 ITGB4P16144 1822 aa10.51□□□□□ -0.73
VPS50-204ENST00000438395 ATP10DQ9P241 1426 aa10.51□□□□□ -0.73
VPS50-204ENST00000438395 RC3H1Q5TC82 1133 aaKnown RBP10.51□□□□□ -0.73
VPS50-204ENST00000438395 CCDC87Q9NVE4 849 aa10.51□□□□□ -0.73
VPS50-204ENST00000438395 CNTNAP4Q9C0A0 1308 aa10.51□□□□□ -0.73
VPS50-204ENST00000438395 TAF1LQ8IZX4 1826 aa10.51□□□□□ -0.73
VPS50-204ENST00000438395 KDM6AO15550 1401 aaPredicted RBP10.5□□□□□ -0.73
VPS50-204ENST00000438395 POTEB3A0JP26 581 aa10.5□□□□□ -0.73
VPS50-204ENST00000438395 POTEBQ6S5H4 581 aa10.5□□□□□ -0.73
VPS50-204ENST00000438395 ZNF526Q8TF50 670 aaPredicted RBP10.5□□□□□ -0.73
VPS50-204ENST00000438395 PARP3Q9Y6F1 533 aa10.5□□□□□ -0.73
VPS50-204ENST00000438395 RPS6KA4O75676 772 aa10.49□□□□□ -0.73
VPS50-204ENST00000438395 ZNF710Q8N1W2 664 aa10.49□□□□□ -0.73
VPS50-204ENST00000438395 NFATC2IPQ8NCF5 419 aa10.49□□□□□ -0.73
VPS50-204ENST00000438395 UBR3Q6ZT12 1888 aa10.49□□□□□ -0.73
VPS50-204ENST00000438395 C2orf72A6NCS6 295 aa10.48□□□□□ -0.73
VPS50-204ENST00000438395 FAM205CA6NFA0 338 aa10.48□□□□□ -0.73
VPS50-204ENST00000438395 CRKLP46109 303 aaKnown RBP10.48□□□□□ -0.73
VPS50-204ENST00000438395 DOK7Q18PE1 504 aa10.48□□□□□ -0.73
VPS50-204ENST00000438395 ARHGEF1Q92888 912 aaKnown RBP10.48□□□□□ -0.73
VPS50-204ENST00000438395 PCDH10Q9P2E7 1040 aa10.48□□□□□ -0.73
VPS50-204ENST00000438395 BCS1LQ9Y276 419 aa10.48□□□□□ -0.73
VPS50-204ENST00000438395 KIF7Q2M1P5 1343 aa10.48□□□□□ -0.73
VPS50-204ENST00000438395 IL13P35225 146 aa10.47□□□□□ -0.73
VPS50-204ENST00000438395 TGFB2P61812 414 aa10.47□□□□□ -0.73
VPS50-204ENST00000438395 AKAP4Q5JQC9 854 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms