RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 ATP6V1AP38606 617 aa16.28■□□□□ 0.2
USP40-205ENST00000430158 ZNF827Q17R98 1081 aa16.28■□□□□ 0.2
USP40-205ENST00000430158 EIF4A1P60842 406 aaKnown RBP16.27■□□□□ 0.2
USP40-205ENST00000430158 CFAP44Q96MT7 982 aa16.27■□□□□ 0.2
USP40-205ENST00000430158 C4BP0C0L5 1744 aa16.27■□□□□ 0.19
USP40-205ENST00000430158 UBR3Q6ZT12 1888 aa16.27■□□□□ 0.19
USP40-205ENST00000430158 AMIGO3Q86WK7 504 aa16.26■□□□□ 0.19
USP40-205ENST00000430158 DNAJC10Q8IXB1 793 aa16.26■□□□□ 0.19
USP40-205ENST00000430158 IFT57Q9NWB7 429 aa16.26■□□□□ 0.19
USP40-205ENST00000430158 QSER1Q2KHR3 1735 aa16.25■□□□□ 0.19
USP40-205ENST00000430158 IL16Q14005 1332 aa16.25■□□□□ 0.19
USP40-205ENST00000430158 SLC15A2Q16348 729 aa16.25■□□□□ 0.19
USP40-205ENST00000430158 WDR63Q8IWG1 891 aa16.25■□□□□ 0.19
USP40-205ENST00000430158 TTC5Q8N0Z6 440 aa16.25■□□□□ 0.19
USP40-205ENST00000430158 FMNL2Q96PY5 1086 aa16.25■□□□□ 0.19
USP40-205ENST00000430158 PRAMEF22A3QJZ6 481 aa16.24■□□□□ 0.19
USP40-205ENST00000430158 CYP19A1P11511 503 aaPredicted RBP16.24■□□□□ 0.19
USP40-205ENST00000430158 RC3H1Q5TC82 1133 aaKnown RBP16.24■□□□□ 0.19
USP40-205ENST00000430158 MBIPQ9NS73 344 aa16.24■□□□□ 0.19
USP40-205ENST00000430158 TSPYL4Q9UJ04 414 aa16.24■□□□□ 0.19
USP40-205ENST00000430158 SALL2Q9Y467 1007 aaPredicted RBP16.24■□□□□ 0.19
USP40-205ENST00000430158 CNTNAP4Q9C0A0 1308 aa16.23■□□□□ 0.19
USP40-205ENST00000430158 GIGYF1O75420 1035 aaPredicted RBP16.23■□□□□ 0.19
USP40-205ENST00000430158 GNAI1P63096 354 aa16.23■□□□□ 0.19
USP40-205ENST00000430158 CALD1Q05682 793 aaKnown RBP16.23■□□□□ 0.19
USP40-205ENST00000430158 INTS5Q6P9B9 1019 aaKnown RBP16.23■□□□□ 0.19
USP40-205ENST00000430158 SNRPA1P09661 255 aaKnown RBP16.22■□□□□ 0.19
USP40-205ENST00000430158 NBPF14Q5TI25 921 aa16.22■□□□□ 0.19
USP40-205ENST00000430158 USP16Q9Y5T5 823 aa16.22■□□□□ 0.19
USP40-205ENST00000430158 CASZ1Q86V15 1759 aa16.21■□□□□ 0.19
USP40-205ENST00000430158 CRKLP46109 303 aaKnown RBP16.21■□□□□ 0.19
USP40-205ENST00000430158 KRT24Q2M2I5 525 aa16.21■□□□□ 0.19
USP40-205ENST00000430158 PDGFDQ9GZP0 370 aaPredicted RBP16.21■□□□□ 0.19
USP40-205ENST00000430158 STK32BQ9NY57 414 aa16.21■□□□□ 0.19
USP40-205ENST00000430158 PNPLA7Q6ZV29 1317 aa16.2■□□□□ 0.18
USP40-205ENST00000430158 HMGB2P26583 209 aaKnown RBP16.2■□□□□ 0.18
USP40-205ENST00000430158 R3HDM1Q15032 1099 aaKnown RBP16.2■□□□□ 0.18
USP40-205ENST00000430158 SMIM5Q71RC9 77 aa16.2■□□□□ 0.18
USP40-205ENST00000430158 TEX13AQ9BXU3 409 aaPredicted RBP16.2■□□□□ 0.18
USP40-205ENST00000430158 LAS1LQ9Y4W2 734 aaKnown RBP16.2■□□□□ 0.18
USP40-205ENST00000430158 LAMB4A4D0S4 1761 aa16.2■□□□□ 0.18
USP40-205ENST00000430158 PSDA5PKW4 1024 aaPredicted RBP16.19■□□□□ 0.18
USP40-205ENST00000430158 RPS6KA4O75676 772 aa16.19■□□□□ 0.18
USP40-205ENST00000430158 TRMT2AQ8IZ69 625 aaKnown RBP16.18■□□□□ 0.18
USP40-205ENST00000430158 TSR2Q969E8 191 aaKnown RBP16.18■□□□□ 0.18
USP40-205ENST00000430158 CCDC87Q9NVE4 849 aa16.18■□□□□ 0.18
USP40-205ENST00000430158 NBPF26B4DH59 902 aa16.17■□□□□ 0.18
USP40-205ENST00000430158 STARD3NLO95772 234 aa16.17■□□□□ 0.18
USP40-205ENST00000430158 A1BGP04217 495 aa16.17■□□□□ 0.18
USP40-205ENST00000430158 EVX2Q03828 476 aa16.17■□□□□ 0.18
USP40-205ENST00000430158 NBPF10Q6P3W6 841 aaKnown RBP16.17■□□□□ 0.18
USP40-205ENST00000430158 COL23A1Q86Y22 540 aaPredicted RBP16.17■□□□□ 0.18
USP40-205ENST00000430158 NBPF15Q8N660 670 aa16.17■□□□□ 0.18
USP40-205ENST00000430158 C8orf58Q8NAV2 365 aa16.17■□□□□ 0.18
USP40-205ENST00000430158 ZBTB1Q9Y2K1 713 aa16.17■□□□□ 0.18
USP40-205ENST00000430158 SOS1Q07889 1333 aaPredicted RBP16.17■□□□□ 0.18
USP40-205ENST00000430158 FANCIQ9NVI1 1328 aa16.17■□□□□ 0.18
USP40-205ENST00000430158 COL24A1Q17RW2 1714 aa16.16■□□□□ 0.18
USP40-205ENST00000430158 GNPATO15228 680 aa16.16■□□□□ 0.18
USP40-205ENST00000430158 EIF5P55010 431 aaKnown RBP16.16■□□□□ 0.18
USP40-205ENST00000430158 AK7Q96M32 723 aa16.16■□□□□ 0.18
USP40-205ENST00000430158 TFCP2L1Q9NZI6 479 aa16.16■□□□□ 0.18
USP40-205ENST00000430158 HOXB7P09629 217 aa16.15■□□□□ 0.18
USP40-205ENST00000430158 C4AP0C0L4 1744 aa16.15■□□□□ 0.18
USP40-205ENST00000430158 SSFA2P28290 1259 aa16.15■□□□□ 0.18
USP40-205ENST00000430158 SLFN5Q08AF3 891 aa16.15■□□□□ 0.18
USP40-205ENST00000430158 PDIA6Q15084 440 aa16.15■□□□□ 0.18
USP40-205ENST00000430158 DUSP27Q5VZP5 1158 aa16.15■□□□□ 0.18
USP40-205ENST00000430158 LRP10Q7Z4F1 713 aa16.15■□□□□ 0.18
USP40-205ENST00000430158 TSPYL6Q8N831 410 aa16.15■□□□□ 0.18
USP40-205ENST00000430158 CDCA7LQ96GN5 454 aa16.15■□□□□ 0.18
USP40-205ENST00000430158 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.14■□□□□ 0.17
USP40-205ENST00000430158 GOLGA2Q08379 1002 aa16.14■□□□□ 0.17
USP40-205ENST00000430158 HNRNPUQ00839 825 aaKnown RBP eCLIP16.13■□□□□ 0.17
USP40-205ENST00000430158 ARHGEF1Q92888 912 aaKnown RBP16.13■□□□□ 0.17
USP40-205ENST00000430158 RTCBQ9Y3I0 505 aaKnown RBP16.13■□□□□ 0.17
USP40-205ENST00000430158 ATXN8OSP0DMR3 200 aa16.12■□□□□ 0.17
USP40-205ENST00000430158 CANXP27824 592 aaKnown RBP16.12■□□□□ 0.17
USP40-205ENST00000430158 IL6STP40189 918 aaPredicted RBP16.12■□□□□ 0.17
USP40-205ENST00000430158 PIP4K2AP48426 406 aaPredicted RBP16.12■□□□□ 0.17
USP40-205ENST00000430158 FLAD1Q8NFF5 587 aa16.12■□□□□ 0.17
USP40-205ENST00000430158 ERBB4Q15303 1308 aa16.12■□□□□ 0.17
USP40-205ENST00000430158 E9PSI1 815 aa16.11■□□□□ 0.17
USP40-205ENST00000430158 EXOSC9Q06265 439 aaKnown RBP16.11■□□□□ 0.17
USP40-205ENST00000430158 PROSER3Q2NL68 480 aa16.11■□□□□ 0.17
USP40-205ENST00000430158 TRAPPC3LQ5T215 181 aa16.11■□□□□ 0.17
USP40-205ENST00000430158 MYH16Q9H6N6 1097 aa16.11■□□□□ 0.17
USP40-205ENST00000430158 CACNA1FO60840 1977 aa16.11■□□□□ 0.17
USP40-205ENST00000430158 ELL2O00472 640 aaPredicted RBP16.1■□□□□ 0.17
USP40-205ENST00000430158 VAMP4O75379 141 aa16.1■□□□□ 0.17
USP40-205ENST00000430158 PHF14O94880 888 aa16.1■□□□□ 0.17
USP40-205ENST00000430158 SLC16A10Q8TF71 515 aa16.1■□□□□ 0.17
USP40-205ENST00000430158 SGIP1Q9BQI5 828 aa16.1■□□□□ 0.17
USP40-205ENST00000430158 ZBED9Q6R2W3 1325 aa16.1■□□□□ 0.17
USP40-205ENST00000430158 SRCAPQ6ZRS2 3230 aa16.1■□□□□ 0.17
USP40-205ENST00000430158 COL15A1P39059 1388 aa16.1■□□□□ 0.17
USP40-205ENST00000430158 EIF2S2P20042 333 aaKnown RBP16.09■□□□□ 0.17
USP40-205ENST00000430158 BCL2L12Q9HB09 334 aa16.09■□□□□ 0.17
USP40-205ENST00000430158 SPDYE2BA6NHP3 402 aa16.08■□□□□ 0.16
USP40-205ENST00000430158 SPDYE6P0CI01 402 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms