RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 NEUROD2Q15784 382 aa27.3■■□□□ 1.96
VSX1-204ENST00000409958 RFC4P35249 363 aa27.29■■□□□ 1.96
VSX1-204ENST00000409958 MIS18AQ9NYP9 233 aa27.29■■□□□ 1.96
VSX1-204ENST00000409958 FHDC1Q9C0D6 1143 aaPredicted RBP27.28■■□□□ 1.96
VSX1-204ENST00000409958 ZBTB1Q9Y2K1 713 aa27.28■■□□□ 1.96
VSX1-204ENST00000409958 SOS1Q07889 1333 aaPredicted RBP27.28■■□□□ 1.96
VSX1-204ENST00000409958 SNRPA1P09661 255 aaKnown RBP27.26■■□□□ 1.95
VSX1-204ENST00000409958 TRIM35Q9UPQ4 493 aa27.26■■□□□ 1.95
VSX1-204ENST00000409958 KDM3BQ7LBC6 1761 aa27.25■■□□□ 1.95
VSX1-204ENST00000409958 APAF1O14727 1248 aa27.24■■□□□ 1.95
VSX1-204ENST00000409958 KLHL34Q8N239 644 aa27.24■■□□□ 1.95
VSX1-204ENST00000409958 BABAM1Q9NWV8 329 aa27.24■■□□□ 1.95
VSX1-204ENST00000409958 C4AP0C0L4 1744 aa27.24■■□□□ 1.95
VSX1-204ENST00000409958 NLGN1Q8N2Q7 840 aa27.23■■□□□ 1.95
VSX1-204ENST00000409958 USP42Q9H9J4 1324 aaKnown RBP27.22■■□□□ 1.95
VSX1-204ENST00000409958 GYS1P13807 737 aa27.22■■□□□ 1.95
VSX1-204ENST00000409958 CANXP27824 592 aaKnown RBP27.22■■□□□ 1.95
VSX1-204ENST00000409958 SYT17Q9BSW7 474 aa27.22■■□□□ 1.95
VSX1-204ENST00000409958 USP16Q9Y5T5 823 aa27.22■■□□□ 1.95
VSX1-204ENST00000409958 COL15A1P39059 1388 aa27.21■■□□□ 1.95
VSX1-204ENST00000409958 EIF4A1P60842 406 aaKnown RBP27.21■■□□□ 1.95
VSX1-204ENST00000409958 TSPYL4Q9UJ04 414 aa27.21■■□□□ 1.95
VSX1-204ENST00000409958 PRAMEF22A3QJZ6 481 aa27.2■■□□□ 1.95
VSX1-204ENST00000409958 EIF5P55010 431 aaKnown RBP27.2■■□□□ 1.95
VSX1-204ENST00000409958 A1BGP04217 495 aa27.19■■□□□ 1.94
VSX1-204ENST00000409958 SRP68Q9UHB9 627 aaKnown RBP27.19■■□□□ 1.94
VSX1-204ENST00000409958 ZPR1O75312 459 aa27.18■■□□□ 1.94
VSX1-204ENST00000409958 IL6STP40189 918 aaPredicted RBP27.18■■□□□ 1.94
VSX1-204ENST00000409958 A0A087WZG4 1122 aa27.17■■□□□ 1.94
VSX1-204ENST00000409958 GIGYF1O75420 1035 aaPredicted RBP27.17■■□□□ 1.94
VSX1-204ENST00000409958 MMP10P09238 476 aa27.17■■□□□ 1.94
VSX1-204ENST00000409958 NARFQ9UHQ1 456 aa27.17■■□□□ 1.94
VSX1-204ENST00000409958 CHL1O00533 1208 aa27.16■■□□□ 1.94
VSX1-204ENST00000409958 USPL1Q5W0Q7 1092 aa27.16■■□□□ 1.94
VSX1-204ENST00000409958 FKBP8Q14318 412 aa27.15■■□□□ 1.94
VSX1-204ENST00000409958 NPM2Q86SE8 214 aaKnown RBP27.14■■□□□ 1.93
VSX1-204ENST00000409958 CD2APQ9Y5K6 639 aa27.13■■□□□ 1.93
VSX1-204ENST00000409958 LAMB4A4D0S4 1761 aa27.12■■□□□ 1.93
VSX1-204ENST00000409958 CALD1Q05682 793 aaKnown RBP27.12■■□□□ 1.93
VSX1-204ENST00000409958 CFAP44Q96MT7 982 aa27.12■■□□□ 1.93
VSX1-204ENST00000409958 ZNF330Q9Y3S2 320 aaPredicted RBP27.12■■□□□ 1.93
VSX1-204ENST00000409958 LAS1LQ9Y4W2 734 aaKnown RBP27.12■■□□□ 1.93
VSX1-204ENST00000409958 NLGN2Q8NFZ4 835 aa27.11■■□□□ 1.93
VSX1-204ENST00000409958 NBPF26B4DH59 902 aa27.1■■□□□ 1.93
VSX1-204ENST00000409958 PIP4K2AP48426 406 aaPredicted RBP27.1■■□□□ 1.93
VSX1-204ENST00000409958 NCBP3Q53F19 620 aaKnown RBP27.1■■□□□ 1.93
VSX1-204ENST00000409958 NBPF10Q6P3W6 841 aaKnown RBP27.1■■□□□ 1.93
VSX1-204ENST00000409958 NBPF15Q8N660 670 aa27.1■■□□□ 1.93
VSX1-204ENST00000409958 BCL2L12Q9HB09 334 aa27.1■■□□□ 1.93
VSX1-204ENST00000409958 PARP3Q9Y6F1 533 aa27.1■■□□□ 1.93
VSX1-204ENST00000409958 CCDC27Q2M243 656 aa27.09■■□□□ 1.93
VSX1-204ENST00000409958 DCAF8L1A6NGE4 600 aa27.08■■□□□ 1.93
VSX1-204ENST00000409958 ZNF853P0CG23 659 aa27.08■■□□□ 1.93
VSX1-204ENST00000409958 TM4SF1P30408 202 aa27.08■■□□□ 1.93
VSX1-204ENST00000409958 TBC1D2BQ9UPU7 963 aa27.08■■□□□ 1.93
VSX1-204ENST00000409958 FAM9BQ8IZU0 186 aa27.07■■□□□ 1.92
VSX1-204ENST00000409958 IFT57Q9NWB7 429 aa27.07■■□□□ 1.92
VSX1-204ENST00000409958 DDR1Q08345 913 aa27.06■■□□□ 1.92
VSX1-204ENST00000409958 DZIP3Q86Y13 1208 aaKnown RBP27.06■■□□□ 1.92
VSX1-204ENST00000409958 CAMTA2O94983 1202 aa27.05■■□□□ 1.92
VSX1-204ENST00000409958 GNAI1P63096 354 aa27.05■■□□□ 1.92
VSX1-204ENST00000409958 ERBB4Q15303 1308 aa27.05■■□□□ 1.92
VSX1-204ENST00000409958 SCN7AQ01118 1682 aa27.04■■□□□ 1.92
VSX1-204ENST00000409958 POLRMTO00411 1230 aaKnown RBP27.04■■□□□ 1.92
VSX1-204ENST00000409958 NFIXQ14938 502 aa27.04■■□□□ 1.92
VSX1-204ENST00000409958 MBIPQ9NS73 344 aa27.04■■□□□ 1.92
VSX1-204ENST00000409958 WWC1Q8IX03 1113 aa27.03■■□□□ 1.92
VSX1-204ENST00000409958 C10orf71Q711Q0 1435 aa27.03■■□□□ 1.92
VSX1-204ENST00000409958 PELP1Q8IZL8 1130 aaKnown RBP27.02■■□□□ 1.92
VSX1-204ENST00000409958 SENP3-EIF4A1A0A087X0R7 540 aa27.01■■□□□ 1.91
VSX1-204ENST00000409958 EIF2S2P20042 333 aaKnown RBP27.01■■□□□ 1.91
VSX1-204ENST00000409958 KRT24Q2M2I5 525 aa27.01■■□□□ 1.91
VSX1-204ENST00000409958 KIF13BQ9NQT8 1826 aa27.01■■□□□ 1.91
VSX1-204ENST00000409958 CCER2I3L3R5 266 aa27■■□□□ 1.91
VSX1-204ENST00000409958 RGL2O15211 777 aa27■■□□□ 1.91
VSX1-204ENST00000409958 HOXB7P09629 217 aa27■■□□□ 1.91
VSX1-204ENST00000409958 TBC1D9BQ66K14 1250 aa26.99■■□□□ 1.91
VSX1-204ENST00000409958 CLEC4GQ6UXB4 293 aa26.99■■□□□ 1.91
VSX1-204ENST00000409958 BCORQ6W2J9 1755 aa26.99■■□□□ 1.91
VSX1-204ENST00000409958 MYL6BP14649 208 aa26.98■■□□□ 1.91
VSX1-204ENST00000409958 TGFB2P61812 414 aa26.97■■□□□ 1.91
VSX1-204ENST00000409958 BICDL1Q6ZP65 573 aa26.97■■□□□ 1.91
VSX1-204ENST00000409958 NGEFQ8N5V2 710 aa26.97■■□□□ 1.91
VSX1-204ENST00000409958 ZNF652Q9Y2D9 606 aa26.97■■□□□ 1.91
VSX1-204ENST00000409958 IL16Q14005 1332 aa26.96■■□□□ 1.91
VSX1-204ENST00000409958 SERPINB2P05120 415 aa26.96■■□□□ 1.91
VSX1-204ENST00000409958 PDIA6Q15084 440 aa26.96■■□□□ 1.91
VSX1-204ENST00000409958 GPR162Q16538 588 aa26.96■■□□□ 1.91
VSX1-204ENST00000409958 DIEXFQ68CQ4 756 aaKnown RBP26.95■■□□□ 1.91
VSX1-204ENST00000409958 WWC3Q9ULE0 1092 aa26.95■■□□□ 1.91
VSX1-204ENST00000409958 DUSP27Q5VZP5 1158 aa26.94■■□□□ 1.9
VSX1-204ENST00000409958 LRP10Q7Z4F1 713 aa26.94■■□□□ 1.9
VSX1-204ENST00000409958 SETDB2Q96T68 719 aa26.94■■□□□ 1.9
VSX1-204ENST00000409958 NRXN2Q9P2S2 1712 aa26.94■■□□□ 1.9
VSX1-204ENST00000409958 PXDNLA1KZ92 1463 aa26.94■■□□□ 1.9
VSX1-204ENST00000409958 CARMIL3Q8ND23 1372 aa26.94■■□□□ 1.9
VSX1-204ENST00000409958 ERVV-1B6SEH8 477 aa26.93■■□□□ 1.9
VSX1-204ENST00000409958 NECTIN2Q92692 538 aa26.93■■□□□ 1.9
VSX1-204ENST00000409958 SALL2Q9Y467 1007 aaPredicted RBP26.93■■□□□ 1.9
VSX1-204ENST00000409958 AFDNP55196 1824 aaKnown RBP26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms