RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 QSER1Q2KHR3 1735 aa38.06■■■■□ 3.68
USP42-202ENST00000404008 USP16Q9Y5T5 823 aa38.06■■■■□ 3.68
USP42-202ENST00000404008 STARD3NLO95772 234 aa38.05■■■■□ 3.68
USP42-202ENST00000404008 NBPF14Q5TI25 921 aa38.05■■■■□ 3.68
USP42-202ENST00000404008 CRKLP46109 303 aaKnown RBP38.04■■■■□ 3.68
USP42-202ENST00000404008 RC3H1Q5TC82 1133 aaKnown RBP38.03■■■■□ 3.68
USP42-202ENST00000404008 STK32BQ9NY57 414 aa38.03■■■■□ 3.68
USP42-202ENST00000404008 SLC15A2Q16348 729 aa38.02■■■■□ 3.68
USP42-202ENST00000404008 C8orf58Q8NAV2 365 aa38.02■■■■□ 3.68
USP42-202ENST00000404008 TRMT2AQ8IZ69 625 aaKnown RBP38.01■■■■□ 3.68
USP42-202ENST00000404008 AK7Q96M32 723 aa38.01■■■■□ 3.68
USP42-202ENST00000404008 HOXB7P09629 217 aa38■■■■□ 3.67
USP42-202ENST00000404008 DUSP27Q5VZP5 1158 aa38■■■■□ 3.67
USP42-202ENST00000404008 INTS5Q6P9B9 1019 aaKnown RBP38■■■■□ 3.67
USP42-202ENST00000404008 CCDC87Q9NVE4 849 aa38■■■■□ 3.67
USP42-202ENST00000404008 GNPATO15228 680 aa37.96■■■■□ 3.67
USP42-202ENST00000404008 EXOSC9Q06265 439 aaKnown RBP37.96■■■■□ 3.67
USP42-202ENST00000404008 TSPYL6Q8N831 410 aa37.96■■■■□ 3.67
USP42-202ENST00000404008 SOS1Q07889 1333 aaPredicted RBP37.96■■■■□ 3.67
USP42-202ENST00000404008 ELL2O00472 640 aaPredicted RBP37.95■■■■□ 3.67
USP42-202ENST00000404008 TFCP2L1Q9NZI6 479 aa37.95■■■■□ 3.67
USP42-202ENST00000404008 ZBTB1Q9Y2K1 713 aa37.95■■■■□ 3.67
USP42-202ENST00000404008 A1BGP04217 495 aa37.94■■■■□ 3.66
USP42-202ENST00000404008 AMIGO3Q86WK7 504 aa37.93■■■■□ 3.66
USP42-202ENST00000404008 YTHDC1Q96MU7 727 aaKnown RBP37.93■■■■□ 3.66
USP42-202ENST00000404008 EIF2S2P20042 333 aaKnown RBP37.93■■■■□ 3.66
USP42-202ENST00000404008 TWISTNBQ3B726 338 aaPredicted RBP37.93■■■■□ 3.66
USP42-202ENST00000404008 RPS6KA4O75676 772 aa37.92■■■■□ 3.66
USP42-202ENST00000404008 C4AP0C0L4 1744 aa37.92■■■■□ 3.66
USP42-202ENST00000404008 RTCBQ9Y3I0 505 aaKnown RBP37.91■■■■□ 3.66
USP42-202ENST00000404008 CANXP27824 592 aaKnown RBP37.9■■■■□ 3.66
USP42-202ENST00000404008 HDGFL1Q5TGJ6 251 aa37.9■■■■□ 3.66
USP42-202ENST00000404008 SSFA2P28290 1259 aa37.89■■■■□ 3.66
USP42-202ENST00000404008 R3HDM1Q15032 1099 aaKnown RBP37.89■■■■□ 3.66
USP42-202ENST00000404008 ERBB4Q15303 1308 aa37.89■■■■□ 3.66
USP42-202ENST00000404008 PNPLA7Q6ZV29 1317 aa37.89■■■■□ 3.66
USP42-202ENST00000404008 CASZ1Q86V15 1759 aa37.88■■■■□ 3.65
USP42-202ENST00000404008 NBPF26B4DH59 902 aa37.88■■■■□ 3.65
USP42-202ENST00000404008 PIP4K2AP48426 406 aaPredicted RBP37.88■■■■□ 3.65
USP42-202ENST00000404008 NBPF10Q6P3W6 841 aaKnown RBP37.88■■■■□ 3.65
USP42-202ENST00000404008 SMIM5Q71RC9 77 aa37.88■■■■□ 3.65
USP42-202ENST00000404008 NBPF15Q8N660 670 aa37.88■■■■□ 3.65
USP42-202ENST00000404008 NECTIN2Q92692 538 aa37.88■■■■□ 3.65
USP42-202ENST00000404008 IL6STP40189 918 aaPredicted RBP37.86■■■■□ 3.65
USP42-202ENST00000404008 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP37.85■■■■□ 3.65
USP42-202ENST00000404008 VAMP4O75379 141 aa37.85■■■■□ 3.65
USP42-202ENST00000404008 PHF14O94880 888 aa37.85■■■■□ 3.65
USP42-202ENST00000404008 ADRA2BP18089 450 aa37.84■■■■□ 3.65
USP42-202ENST00000404008 EIF5P55010 431 aaKnown RBP37.84■■■■□ 3.65
USP42-202ENST00000404008 FLAD1Q8NFF5 587 aa37.84■■■■□ 3.65
USP42-202ENST00000404008 PSDA5PKW4 1024 aaPredicted RBP37.83■■■■□ 3.65
USP42-202ENST00000404008 COL15A1P39059 1388 aa37.83■■■■□ 3.65
USP42-202ENST00000404008 PDIA6Q15084 440 aa37.83■■■■□ 3.65
USP42-202ENST00000404008 CHMP4AQ9BY43 222 aa37.83■■■■□ 3.65
USP42-202ENST00000404008 TRAPPC3LQ5T215 181 aa37.81■■■■□ 3.64
USP42-202ENST00000404008 COL23A1Q86Y22 540 aaPredicted RBP37.81■■■■□ 3.64
USP42-202ENST00000404008 CHPF2Q9P2E5 772 aa37.81■■■■□ 3.64
USP42-202ENST00000404008 CCDC30Q5VVM6 783 aa37.8■■■■□ 3.64
USP42-202ENST00000404008 MYL6BP14649 208 aa37.8■■■■□ 3.64
USP42-202ENST00000404008 PROSER3Q2NL68 480 aa37.8■■■■□ 3.64
USP42-202ENST00000404008 ARHGEF1Q92888 912 aaKnown RBP37.8■■■■□ 3.64
USP42-202ENST00000404008 DDX21Q9NR30 783 aaKnown RBP eCLIP37.8■■■■□ 3.64
USP42-202ENST00000404008 DBF4Q9UBU7 674 aaPredicted RBP37.8■■■■□ 3.64
USP42-202ENST00000404008 CACNA1FO60840 1977 aa37.79■■■■□ 3.64
USP42-202ENST00000404008 PDGFDQ9GZP0 370 aaPredicted RBP37.79■■■■□ 3.64
USP42-202ENST00000404008 ZNF330Q9Y3S2 320 aaPredicted RBP37.79■■■■□ 3.64
USP42-202ENST00000404008 LRP10Q7Z4F1 713 aa37.78■■■■□ 3.64
USP42-202ENST00000404008 ANXA1P04083 346 aa37.77■■■■□ 3.64
USP42-202ENST00000404008 BCORQ6W2J9 1755 aa37.76■■■■□ 3.64
USP42-202ENST00000404008 SCN7AQ01118 1682 aa37.76■■■■□ 3.63
USP42-202ENST00000404008 A0A087WZG4 1122 aa37.74■■■■□ 3.63
USP42-202ENST00000404008 MSH5O43196 834 aa37.74■■■■□ 3.63
USP42-202ENST00000404008 CT47B1P0C2W7 299 aaPredicted RBP37.74■■■■□ 3.63
USP42-202ENST00000404008 RFC4P35249 363 aa37.74■■■■□ 3.63
USP42-202ENST00000404008 NPM2Q86SE8 214 aaKnown RBP37.73■■■■□ 3.63
USP42-202ENST00000404008 TCERG1O14776 1098 aaKnown RBP37.72■■■■□ 3.63
USP42-202ENST00000404008 STK31Q9BXU1 1019 aa37.72■■■■□ 3.63
USP42-202ENST00000404008 HYPKQ9NX55 129 aa37.72■■■■□ 3.63
USP42-202ENST00000404008 USP42Q9H9J4 1324 aaKnown RBP37.71■■■■□ 3.63
USP42-202ENST00000404008 ZNF428Q96B54 188 aa37.7■■■■□ 3.63
USP42-202ENST00000404008 NARFQ9UHQ1 456 aa37.69■■■■□ 3.62
USP42-202ENST00000404008 TBC1D2BQ9UPU7 963 aa37.69■■■■□ 3.62
USP42-202ENST00000404008 DZIP3Q86Y13 1208 aaKnown RBP37.68■■■■□ 3.62
USP42-202ENST00000404008 SRP68Q9UHB9 627 aaKnown RBP37.68■■■■□ 3.62
USP42-202ENST00000404008 COL24A1Q17RW2 1714 aa37.68■■■■□ 3.62
USP42-202ENST00000404008 SLC16A10Q8TF71 515 aa37.68■■■■□ 3.62
USP42-202ENST00000404008 ARXQ96QS3 562 aa37.67■■■■□ 3.62
USP42-202ENST00000404008 ZPR1O75312 459 aa37.66■■■■□ 3.62
USP42-202ENST00000404008 SLC4A2P04920 1241 aa37.66■■■■□ 3.62
USP42-202ENST00000404008 TTLL7Q6ZT98 887 aa37.66■■■■□ 3.62
USP42-202ENST00000404008 XAGE3Q8WTP9 111 aa37.66■■■■□ 3.62
USP42-202ENST00000404008 COPS6Q7L5N1 327 aa37.65■■■■□ 3.62
USP42-202ENST00000404008 USPL1Q5W0Q7 1092 aa37.64■■■■□ 3.62
USP42-202ENST00000404008 PHAXQ9H814 394 aaKnown RBP37.64■■■■□ 3.62
USP42-202ENST00000404008 NUP98P52948 1817 aa37.63■■■■□ 3.61
USP42-202ENST00000404008 CAMTA2O94983 1202 aa37.63■■■■□ 3.61
USP42-202ENST00000404008 GYS1P13807 737 aa37.63■■■■□ 3.61
USP42-202ENST00000404008 KIF6Q6ZMV9 814 aa37.63■■■■□ 3.61
USP42-202ENST00000404008 AIMP1Q12904 312 aaKnown RBP37.62■■■■□ 3.61
USP42-202ENST00000404008 ALDH1L2Q3SY69 923 aa37.62■■■■□ 3.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms