RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 TXLNAP40222 546 aa7.04□□□□□ -1.28
VPS13B-203ENST00000358544 SSH1Q8WYL5 1049 aa7.04□□□□□ -1.28
VPS13B-203ENST00000358544 TWISTNBQ3B726 338 aaPredicted RBP7.04□□□□□ -1.28
VPS13B-203ENST00000358544 GIGYF2Q6Y7W6 1299 aaKnown RBP7.04□□□□□ -1.28
VPS13B-203ENST00000358544 NEK11Q8NG66 645 aa7.04□□□□□ -1.28
VPS13B-203ENST00000358544 HDAC1Q13547 482 aaPredicted RBP7.03□□□□□ -1.28
VPS13B-203ENST00000358544 CCDC114Q96M63 670 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 SPTBN2O15020 2390 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 ANKRD18AQ8IVF6 992 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 SYT1P21579 422 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 BLOC1S2Q6QNY1 142 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 SPTBN1Q01082 2364 aaKnown RBP7.03□□□□□ -1.28
VPS13B-203ENST00000358544 GOLIM4O00461 696 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 PRKAR2BP31323 418 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 INPP5BP32019 993 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 HNRNPMP52272 730 aaKnown RBP eCLIP7.03□□□□□ -1.283e-7■■■■■ 30.8
VPS13B-203ENST00000358544 ANKRD50Q9ULJ7 1429 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 ANKRD30BQ9BXX2 1392 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 EIF2S2P20042 333 aaKnown RBP7.03□□□□□ -1.28
VPS13B-203ENST00000358544 MYH9P35579 1960 aaKnown RBP7.03□□□□□ -1.28
VPS13B-203ENST00000358544 B4GALNT4Q76KP1 1039 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 WIZO95785 1651 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 ZSCAN22P10073 491 aaPredicted RBP7.03□□□□□ -1.28
VPS13B-203ENST00000358544 TRIM27P14373 513 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 CCDC50Q8IVM0 306 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 HMOX1P09601 288 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 ABCC11Q96J66 1382 aa7.03□□□□□ -1.28
VPS13B-203ENST00000358544 KRT32Q14532 448 aa7.02□□□□□ -1.28
VPS13B-203ENST00000358544 CCDC69A6NI79 296 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 TUBB4BP68371 445 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 ZSCAN26Q16670 478 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 ALDH1L2Q3SY69 923 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 CCAR1Q8IX12 1150 aaKnown RBP7.02□□□□□ -1.29
VPS13B-203ENST00000358544 ANKS4BQ8N8V4 417 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 TMX3Q96JJ7 454 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 TMCO5BA8MYB1 307 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 ZNF75DP51815 510 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 MPHOSPH10O00566 681 aaKnown RBP7.02□□□□□ -1.29
VPS13B-203ENST00000358544 OAS2P29728 719 aaKnown RBP7.02□□□□□ -1.29
VPS13B-203ENST00000358544 AMPHP49418 695 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 KIAA1107Q9UPP5 1409 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 MAP2K1Q02750 393 aaPredicted RBP7.02□□□□□ -1.29
VPS13B-203ENST00000358544 CKAP4Q07065 602 aaKnown RBP7.02□□□□□ -1.29
VPS13B-203ENST00000358544 SART3Q15020 963 aaKnown RBP7.02□□□□□ -1.29
VPS13B-203ENST00000358544 ANO6Q4KMQ2 910 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 OTUD6BQ8N6M0 293 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 NSRP1Q9H0G5 558 aaKnown RBP7.02□□□□□ -1.29
VPS13B-203ENST00000358544 SMARCA2P51531 1590 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 MAP4K4O95819 1239 aaPredicted RBP7.02□□□□□ -1.29
VPS13B-203ENST00000358544 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.02□□□□□ -1.297e-7■■□□□ 13.2
VPS13B-203ENST00000358544 SEC16AO15027 2179 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 SEC24BO95487 1268 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 CWC27Q6UX04 472 aaKnown RBP7.02□□□□□ -1.29
VPS13B-203ENST00000358544 AACSQ86V21 672 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 GOLGA5Q8TBA6 731 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 CACNA1GO43497 2377 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 BIN1O00499 593 aa7.02□□□□□ -1.29
VPS13B-203ENST00000358544 SLC3A2P08195 630 aaKnown RBP7.02□□□□□ -1.29
VPS13B-203ENST00000358544 GJB2P29033 226 aa7.01□□□□□ -1.29
VPS13B-203ENST00000358544 SYT10Q6XYQ8 523 aa7.01□□□□□ -1.29
VPS13B-203ENST00000358544 FMNL3Q8IVF7 1028 aa7.01□□□□□ -1.29
VPS13B-203ENST00000358544 EFCC1Q9HA90 598 aa7.01□□□□□ -1.29
VPS13B-203ENST00000358544 ATRIPQ8WXE1 791 aa7.01□□□□□ -1.29
VPS13B-203ENST00000358544 EFCAB2Q5VUJ9 269 aa7.01□□□□□ -1.29
VPS13B-203ENST00000358544 TUBBP07437 444 aa7.01□□□□□ -1.29
VPS13B-203ENST00000358544 LTV1Q96GA3 475 aaPredicted RBP7.01□□□□□ -1.29
VPS13B-203ENST00000358544 CDKL5O76039 1030 aa7.01□□□□□ -1.29
VPS13B-203ENST00000358544 NEBLO76041 1014 aa7.01□□□□□ -1.29
VPS13B-203ENST00000358544 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.01□□□□□ -1.29
VPS13B-203ENST00000358544 DNAJC25Q9H1X3 360 aa7.01□□□□□ -1.29
VPS13B-203ENST00000358544 MCTP2Q6DN12 878 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 ATP2B3Q16720 1220 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 WASHC4Q2M389 1173 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 NUP88Q99567 741 aaPredicted RBP7□□□□□ -1.29
VPS13B-203ENST00000358544 ICE2Q659A1 982 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 KAT6AQ92794 2004 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 ERICH2A1L162 156 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 GAS2L3Q86XJ1 694 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 HDGFP51858 240 aaKnown RBP7□□□□□ -1.29
VPS13B-203ENST00000358544 PCDHB15Q9Y5E8 787 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7□□□□□ -1.29
VPS13B-203ENST00000358544 SPATA24Q86W54 205 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 XBP1P17861 261 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 ISM2Q6H9L7 571 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 CTAGE9A4FU28 777 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 SEPT7Q16181 437 aaKnown RBP7□□□□□ -1.29
VPS13B-203ENST00000358544 PRM3Q9NNZ6 103 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 KIF4AO95239 1232 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 KLHL10Q6JEL2 608 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 RPAINQ86UA6 219 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 NUTM1Q86Y26 1132 aa7□□□□□ -1.29
VPS13B-203ENST00000358544 RNF216Q9NWF9 866 aaPredicted RBP7□□□□□ -1.29
VPS13B-203ENST00000358544 MINK1Q8N4C8 1332 aaPredicted RBP6.99□□□□□ -1.29
VPS13B-203ENST00000358544 RHOXF2BP0C7M4 288 aa6.99□□□□□ -1.29
VPS13B-203ENST00000358544 CHMP4BP1P59074 171 aa6.99□□□□□ -1.29
VPS13B-203ENST00000358544 RBBP5Q15291 538 aaKnown RBP6.99□□□□□ -1.29
VPS13B-203ENST00000358544 RPAP2Q8IXW5 612 aaPredicted RBP6.99□□□□□ -1.29
VPS13B-203ENST00000358544 RHOXF2Q9BQY4 288 aa6.99□□□□□ -1.29
VPS13B-203ENST00000358544 ERBB4Q15303 1308 aa6.99□□□□□ -1.29
VPS13B-203ENST00000358544 ZNF644Q9H582 1327 aaPredicted RBP6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms