RNA–Protein interactions for RNA: ENST00000357517.6

PCDH1-202, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 3,307 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-202ENST00000357517 ARHGAP31Q2M1Z3 1444 aa12.32□□□□□ -0.44
PCDH1-202ENST00000357517 CCDC91Q7Z6B0 441 aa12.32□□□□□ -0.44
PCDH1-202ENST00000357517 DACT1Q9NYF0 836 aa12.32□□□□□ -0.44
PCDH1-202ENST00000357517 DNAI1Q9UI46 699 aa12.32□□□□□ -0.44
PCDH1-202ENST00000357517 ERBB3P21860 1342 aa12.32□□□□□ -0.44
PCDH1-202ENST00000357517 STX6O43752 255 aa12.32□□□□□ -0.44
PCDH1-202ENST00000357517 SASH3O75995 380 aa12.32□□□□□ -0.44
PCDH1-202ENST00000357517 SYT1P21579 422 aa12.32□□□□□ -0.44
PCDH1-202ENST00000357517 FUCA2Q9BTY2 467 aa12.32□□□□□ -0.44
PCDH1-202ENST00000357517 TCHHQ07283 1943 aa12.32□□□□□ -0.44
PCDH1-202ENST00000357517 ZSCAN22P10073 491 aaPredicted RBP12.31□□□□□ -0.44
PCDH1-202ENST00000357517 PDE6BP35913 854 aa12.31□□□□□ -0.44
PCDH1-202ENST00000357517 SEMA3FQ13275 785 aa12.31□□□□□ -0.44
PCDH1-202ENST00000357517 HSP90AB3PQ58FF7 597 aa12.31□□□□□ -0.44
PCDH1-202ENST00000357517 RABEP2Q9H5N1 569 aa12.31□□□□□ -0.44
PCDH1-202ENST00000357517 SMC3Q9UQE7 1217 aa12.31□□□□□ -0.44
PCDH1-202ENST00000357517 ZBTB12Q9Y330 459 aaPredicted RBP12.31□□□□□ -0.44
PCDH1-202ENST00000357517 H2AFXP16104 143 aaPredicted RBP12.31□□□□□ -0.44
PCDH1-202ENST00000357517 MCCP23508 829 aa12.31□□□□□ -0.44
PCDH1-202ENST00000357517 SATB1Q01826 763 aa12.31□□□□□ -0.44
PCDH1-202ENST00000357517 GOLGA5Q8TBA6 731 aa12.31□□□□□ -0.44
PCDH1-202ENST00000357517 DNAAF4Q8WXU2 420 aa12.31□□□□□ -0.44
PCDH1-202ENST00000357517 SLC12A5Q9H2X9 1139 aa12.31□□□□□ -0.44
PCDH1-202ENST00000357517 ATG3Q9NT62 314 aa12.31□□□□□ -0.44
PCDH1-202ENST00000357517 TSGA10IPQ3SY00 556 aa12.31□□□□□ -0.44
PCDH1-202ENST00000357517 CREBRFQ8IUR6 639 aa12.31□□□□□ -0.44
PCDH1-202ENST00000357517 CARD6Q9BX69 1037 aa12.31□□□□□ -0.44
PCDH1-202ENST00000357517 ASXL1Q8IXJ9 1541 aa12.3□□□□□ -0.44
PCDH1-202ENST00000357517 NUP153P49790 1475 aaKnown RBP12.3□□□□□ -0.44
PCDH1-202ENST00000357517 BECN2A8MW95 431 aa12.3□□□□□ -0.44
PCDH1-202ENST00000357517 TICAM2Q86XR7 235 aa12.3□□□□□ -0.44
PCDH1-202ENST00000357517 ERCC4Q92889 916 aaPredicted RBP12.3□□□□□ -0.44
PCDH1-202ENST00000357517 CCDC171Q6TFL3 1326 aa12.29□□□□□ -0.44
PCDH1-202ENST00000357517 RAD50Q92878 1312 aa12.29□□□□□ -0.44
PCDH1-202ENST00000357517 ACTN2P35609 894 aa12.29□□□□□ -0.44
PCDH1-202ENST00000357517 FBLN2P98095 1184 aa12.29□□□□□ -0.44
PCDH1-202ENST00000357517 CEBPZQ03701 1054 aaKnown RBP12.29□□□□□ -0.44
PCDH1-202ENST00000357517 PRPF38AQ8NAV1 312 aaKnown RBP12.29□□□□□ -0.44
PCDH1-202ENST00000357517 MAP4K4O95819 1239 aaPredicted RBP12.29□□□□□ -0.44
PCDH1-202ENST00000357517 REXO1L1PQ8IX06 675 aa12.29□□□□□ -0.44
PCDH1-202ENST00000357517 BICD2Q8TD16 824 aa12.29□□□□□ -0.44
PCDH1-202ENST00000357517 FMNL2Q96PY5 1086 aa12.29□□□□□ -0.44
PCDH1-202ENST00000357517 F13A1P00488 732 aa12.29□□□□□ -0.44
PCDH1-202ENST00000357517 MAGEA9P43362 315 aa12.29□□□□□ -0.44
PCDH1-202ENST00000357517 CCDC83Q8IWF9 413 aa12.29□□□□□ -0.44
PCDH1-202ENST00000357517 SLC24A3Q9HC58 644 aa12.29□□□□□ -0.44
PCDH1-202ENST00000357517 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.29□□□□□ -0.44
PCDH1-202ENST00000357517 ATP6V1AP38606 617 aa12.28□□□□□ -0.44
PCDH1-202ENST00000357517 TSPYL6Q8N831 410 aa12.28□□□□□ -0.44
PCDH1-202ENST00000357517 ABCC2Q92887 1545 aa12.28□□□□□ -0.44
PCDH1-202ENST00000357517 TMPOP42166 694 aaKnown RBP12.28□□□□□ -0.44
PCDH1-202ENST00000357517 RPAINQ86UA6 219 aa12.28□□□□□ -0.44
PCDH1-202ENST00000357517 SCP2P22307 547 aa12.27□□□□□ -0.44
PCDH1-202ENST00000357517 BIRC2Q13490 618 aa12.27□□□□□ -0.44
PCDH1-202ENST00000357517 SLFNL1Q499Z3 407 aa12.27□□□□□ -0.44
PCDH1-202ENST00000357517 LIG3P49916 1009 aa12.27□□□□□ -0.45
PCDH1-202ENST00000357517 NYAP1Q6ZVC0 841 aa12.27□□□□□ -0.45
PCDH1-202ENST00000357517 DONSONQ9NYP3 566 aa12.27□□□□□ -0.45
PCDH1-202ENST00000357517 CLASP1Q7Z460 1538 aa12.27□□□□□ -0.45
PCDH1-202ENST00000357517 MCM2P49736 904 aa12.27□□□□□ -0.45
PCDH1-202ENST00000357517 EVCP57679 992 aa12.27□□□□□ -0.45
PCDH1-202ENST00000357517 CUL4AQ13619 759 aa12.27□□□□□ -0.45
PCDH1-202ENST00000357517 WWC2Q6AWC2 1192 aa12.27□□□□□ -0.45
PCDH1-202ENST00000357517 STAG3Q9UJ98 1225 aa12.27□□□□□ -0.45
PCDH1-202ENST00000357517 SH3BP1Q9Y3L3 701 aa12.27□□□□□ -0.45
PCDH1-202ENST00000357517 TROQ12816 1431 aaPredicted RBP12.27□□□□□ -0.45
PCDH1-202ENST00000357517 MAP2K1Q02750 393 aaPredicted RBP12.26□□□□□ -0.45
PCDH1-202ENST00000357517 PTPN21Q16825 1174 aa12.26□□□□□ -0.45
PCDH1-202ENST00000357517 RNF20Q5VTR2 975 aa12.26□□□□□ -0.45
PCDH1-202ENST00000357517 LRCH2Q5VUJ6 765 aa12.26□□□□□ -0.45
PCDH1-202ENST00000357517 PPM1EQ8WY54 764 aa12.26□□□□□ -0.45
PCDH1-202ENST00000357517 RAI14Q9P0K7 980 aa12.26□□□□□ -0.45
PCDH1-202ENST00000357517 ORC3Q9UBD5 711 aaPredicted RBP12.26□□□□□ -0.45
PCDH1-202ENST00000357517 ATP6V1DQ9Y5K8 247 aa12.26□□□□□ -0.45
PCDH1-202ENST00000357517 GPATCH8Q9UKJ3 1502 aaKnown RBP12.26□□□□□ -0.45
PCDH1-202ENST00000357517 H3BQF6 201 aa12.26□□□□□ -0.45
PCDH1-202ENST00000357517 KRT24Q2M2I5 525 aa12.26□□□□□ -0.45
PCDH1-202ENST00000357517 MCTP2Q6DN12 878 aa12.26□□□□□ -0.45
PCDH1-202ENST00000357517 PLA2G4DQ86XP0 818 aa12.26□□□□□ -0.45
PCDH1-202ENST00000357517 TARBP1Q13395 1621 aaKnown RBP12.25□□□□□ -0.45
PCDH1-202ENST00000357517 PBRM1Q86U86 1689 aa12.25□□□□□ -0.45
PCDH1-202ENST00000357517 TBC1D8O95759 1140 aa12.25□□□□□ -0.45
PCDH1-202ENST00000357517 PLEKHO1Q53GL0 409 aaPredicted RBP12.25□□□□□ -0.45
PCDH1-202ENST00000357517 CCDC102AQ96A19 550 aa12.25□□□□□ -0.45
PCDH1-202ENST00000357517 TRIM35Q9UPQ4 493 aa12.25□□□□□ -0.45
PCDH1-202ENST00000357517 N4BP1O75113 896 aaKnown RBP12.25□□□□□ -0.45
PCDH1-202ENST00000357517 GJB2P29033 226 aa12.25□□□□□ -0.45
PCDH1-202ENST00000357517 TTC6Q86TZ1 520 aa12.25□□□□□ -0.45
PCDH1-202ENST00000357517 SGSM3Q96HU1 749 aa12.25□□□□□ -0.45
PCDH1-202ENST00000357517 PDE11AQ9HCR9 933 aa12.25□□□□□ -0.45
PCDH1-202ENST00000357517 ARFGAP3Q9NP61 516 aa12.25□□□□□ -0.45
PCDH1-202ENST00000357517 ARHGEF12Q9NZN5 1544 aa12.25□□□□□ -0.45
PCDH1-202ENST00000357517 PLEKHG2Q9H7P9 1386 aa12.25□□□□□ -0.45
PCDH1-202ENST00000357517 ZRANB2O95218 330 aaKnown RBP eCLIP12.24□□□□□ -0.45
PCDH1-202ENST00000357517 TTC19Q6DKK2 380 aaPredicted RBP12.24□□□□□ -0.45
PCDH1-202ENST00000357517 NECAB1Q8N987 351 aa12.24□□□□□ -0.45
PCDH1-202ENST00000357517 INTS4Q96HW7 963 aaKnown RBP12.24□□□□□ -0.45
PCDH1-202ENST00000357517 PHF23Q9BUL5 403 aaPredicted RBP12.24□□□□□ -0.45
PCDH1-202ENST00000357517 ADAMTS12P58397 1594 aa12.24□□□□□ -0.45
PCDH1-202ENST00000357517 SMC2O95347 1197 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms