RNA–Protein interactions for RNA: ENST00000357517.6

PCDH1-202, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 3,307 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-202ENST00000357517 NISCHQ9Y2I1 1504 aa18.1■□□□□ 0.49
PCDH1-202ENST00000357517 PELP1Q8IZL8 1130 aaKnown RBP17.9■□□□□ 0.46
PCDH1-202ENST00000357517 PPARGC1BQ86YN6 1023 aaKnown RBP17.82■□□□□ 0.44
PCDH1-202ENST00000357517 HRCP23327 699 aa17.78■□□□□ 0.44
PCDH1-202ENST00000357517 PCGF6Q9BYE7 350 aa17.53■□□□□ 0.4
PCDH1-202ENST00000357517 MYT1Q01538 1121 aa17.44■□□□□ 0.38
PCDH1-202ENST00000357517 SCAF1Q9H7N4 1312 aaKnown RBP17.29■□□□□ 0.36
PCDH1-202ENST00000357517 SUPT5HO00267 1087 aaKnown RBP16.99■□□□□ 0.31
PCDH1-202ENST00000357517 SHROOM4Q9ULL8 1493 aa16.78■□□□□ 0.28
PCDH1-202ENST00000357517 GTF3C3Q9Y5Q9 886 aa16.7■□□□□ 0.26
PCDH1-202ENST00000357517 NEUROD1Q13562 356 aa16.67■□□□□ 0.26
PCDH1-202ENST00000357517 MYO15BQ96JP2 1530 aa16.61■□□□□ 0.25
PCDH1-202ENST00000357517 ACIN1Q9UKV3 1341 aaKnown RBP16.6■□□□□ 0.25
PCDH1-202ENST00000357517 TTBK1Q5TCY1 1321 aaPredicted RBP16.53■□□□□ 0.24
PCDH1-202ENST00000357517 LOC105371045A0A1W2PR82 267 aa16.5■□□□□ 0.23
PCDH1-202ENST00000357517 CHIC1Q5VXU3 224 aa16.48■□□□□ 0.23
PCDH1-202ENST00000357517 TRIM26Q12899 539 aaPredicted RBP16.45■□□□□ 0.22
PCDH1-202ENST00000357517 BCL11AQ9H165 835 aa16.43■□□□□ 0.22
PCDH1-202ENST00000357517 PRKCSHP14314 528 aaPredicted RBP16.43■□□□□ 0.22
PCDH1-202ENST00000357517 CENPBP07199 599 aaPredicted RBP16.37■□□□□ 0.21
PCDH1-202ENST00000357517 ZEB1P37275 1124 aaPredicted RBP16.37■□□□□ 0.21
PCDH1-202ENST00000357517 YTHDC1Q96MU7 727 aaKnown RBP16.34■□□□□ 0.21
PCDH1-202ENST00000357517 FAM9AQ8IZU1 332 aaPredicted RBP16.32■□□□□ 0.2
PCDH1-202ENST00000357517 EHMT2Q96KQ7 1210 aa16.16■□□□□ 0.18
PCDH1-202ENST00000357517 DIEXFQ68CQ4 756 aaKnown RBP16.14■□□□□ 0.17
PCDH1-202ENST00000357517 DCAF1Q9Y4B6 1507 aa16.07■□□□□ 0.16
PCDH1-202ENST00000357517 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.05■□□□□ 0.16
PCDH1-202ENST00000357517 CCER1Q8TC90 406 aaPredicted RBP15.99■□□□□ 0.15
PCDH1-202ENST00000357517 ERICH6Q7L0X2 663 aa15.98■□□□□ 0.15
PCDH1-202ENST00000357517 CSRNP3Q8WYN3 585 aa15.97■□□□□ 0.15
PCDH1-202ENST00000357517 ANP32EQ9BTT0 268 aa15.96■□□□□ 0.14
PCDH1-202ENST00000357517 CCDC180Q9P1Z9 1646 aa15.89■□□□□ 0.14
PCDH1-202ENST00000357517 APLP2Q06481 763 aa15.71■□□□□ 0.1
PCDH1-202ENST00000357517 MIER1Q8N108 512 aa15.7■□□□□ 0.1
PCDH1-202ENST00000357517 TSHZ2Q9NRE2 1034 aa15.68■□□□□ 0.1
PCDH1-202ENST00000357517 BCANQ96GW7 911 aa15.63■□□□□ 0.09
PCDH1-202ENST00000357517 DCAF8L2P0C7V8 631 aa15.61■□□□□ 0.09
PCDH1-202ENST00000357517 SUPT16HQ9Y5B9 1047 aaKnown RBP15.6■□□□□ 0.09
PCDH1-202ENST00000357517 ZNF316A6NFI3 1004 aaPredicted RBP15.56■□□□□ 0.08
PCDH1-202ENST00000357517 TRIM41Q8WV44 630 aa15.54■□□□□ 0.08
PCDH1-202ENST00000357517 ANO8Q9HCE9 1232 aaPredicted RBP15.5■□□□□ 0.07
PCDH1-202ENST00000357517 CCDC136Q96JN2 1154 aa15.37■□□□□ 0.05
PCDH1-202ENST00000357517 ZCCHC6Q5VYS8 1495 aaKnown RBP15.33■□□□□ 0.05
PCDH1-202ENST00000357517 ITGAEP38570 1179 aa15.32■□□□□ 0.04
PCDH1-202ENST00000357517 RBM19Q9Y4C8 960 aaKnown RBP15.31■□□□□ 0.04
PCDH1-202ENST00000357517 FKBP8Q14318 412 aa15.25■□□□□ 0.03
PCDH1-202ENST00000357517 SALL2Q9Y467 1007 aaPredicted RBP15.24■□□□□ 0.03
PCDH1-202ENST00000357517 MSH5O43196 834 aa15.2■□□□□ 0.02
PCDH1-202ENST00000357517 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.19■□□□□ 0.02
PCDH1-202ENST00000357517 RTN4Q9NQC3 1192 aaKnown RBP15.19■□□□□ 0.02
PCDH1-202ENST00000357517 DEKP35659 375 aaKnown RBP15.18■□□□□ 0.02
PCDH1-202ENST00000357517 SLC24A1O60721 1099 aa15.16■□□□□ 0.02
PCDH1-202ENST00000357517 HNRNPUL2Q1KMD3 747 aaKnown RBP15.15■□□□□ 0.02
PCDH1-202ENST00000357517 NBR1Q14596 966 aa15.11■□□□□ 0.01
PCDH1-202ENST00000357517 KCNH8Q96L42 1107 aa15.1■□□□□ 0.01
PCDH1-202ENST00000357517 EIF5BO60841 1220 aaKnown RBP15.09■□□□□ 0.01
PCDH1-202ENST00000357517 CLSPNQ9HAW4 1339 aa15.09■□□□□ 0.01
PCDH1-202ENST00000357517 NEFLP07196 543 aa15.05■□□□□ 0
PCDH1-202ENST00000357517 UBE2Q2Q8WVN8 375 aa14.96□□□□□ -0.01
PCDH1-202ENST00000357517 IRX6P78412 446 aaPredicted RBP14.95□□□□□ -0.02
PCDH1-202ENST00000357517 IL27Q8NEV9 243 aa14.95□□□□□ -0.02
PCDH1-202ENST00000357517 TRIM52Q96A61 297 aa14.92□□□□□ -0.02
PCDH1-202ENST00000357517 PLEKHG5O94827 1062 aa14.9□□□□□ -0.02
PCDH1-202ENST00000357517 CDK11AQ9UQ88 783 aaPredicted RBP14.86□□□□□ -0.03
PCDH1-202ENST00000357517 RTL5Q5HYW3 569 aaPredicted RBP14.77□□□□□ -0.04
PCDH1-202ENST00000357517 PKNOX2Q96KN3 472 aa14.77□□□□□ -0.04
PCDH1-202ENST00000357517 MYT1LQ9UL68 1186 aa14.77□□□□□ -0.05
PCDH1-202ENST00000357517 FANCIQ9NVI1 1328 aa14.76□□□□□ -0.05
PCDH1-202ENST00000357517 PAK3O75914 559 aaPredicted RBP14.73□□□□□ -0.05
PCDH1-202ENST00000357517 RANGAP1P46060 587 aaPredicted RBP14.71□□□□□ -0.05
PCDH1-202ENST00000357517 DDX10Q13206 875 aaKnown RBP14.71□□□□□ -0.05
PCDH1-202ENST00000357517 UBTFP17480 764 aaKnown RBP14.7□□□□□ -0.06
PCDH1-202ENST00000357517 PODXL2Q9NZ53 605 aa14.7□□□□□ -0.06
PCDH1-202ENST00000357517 ERICH6BQ5W0A0 696 aa14.69□□□□□ -0.06
PCDH1-202ENST00000357517 DAXXQ9UER7 740 aaPredicted RBP14.69□□□□□ -0.06
PCDH1-202ENST00000357517 NOP58Q9Y2X3 529 aaKnown RBP14.68□□□□□ -0.06
PCDH1-202ENST00000357517 TIMELESSQ9UNS1 1208 aa14.68□□□□□ -0.06
PCDH1-202ENST00000357517 HIRIP3Q9BW71 556 aaPredicted RBP14.66□□□□□ -0.06
PCDH1-202ENST00000357517 B4GALNT3Q6L9W6 998 aa14.59□□□□□ -0.07
PCDH1-202ENST00000357517 LAS1LQ9Y4W2 734 aaKnown RBP14.54□□□□□ -0.08
PCDH1-202ENST00000357517 RSF1Q96T23 1441 aaPredicted RBP14.53□□□□□ -0.08
PCDH1-202ENST00000357517 ABCC9O60706 1549 aa14.53□□□□□ -0.08
PCDH1-202ENST00000357517 NPM2Q86SE8 214 aaKnown RBP14.53□□□□□ -0.08
PCDH1-202ENST00000357517 BRPF3Q9ULD4 1205 aa14.52□□□□□ -0.08
PCDH1-202ENST00000357517 HNRNPUQ00839 825 aaKnown RBP eCLIP14.52□□□□□ -0.09
PCDH1-202ENST00000357517 ZBTB47Q9UFB7 747 aaPredicted RBP14.51□□□□□ -0.09
PCDH1-202ENST00000357517 CEP162Q5TB80 1403 aa14.5□□□□□ -0.09
PCDH1-202ENST00000357517 SCRIBQ14160 1630 aa14.48□□□□□ -0.09
PCDH1-202ENST00000357517 ANP32AP39687 249 aaKnown RBP14.47□□□□□ -0.09
PCDH1-202ENST00000357517 NEFMP07197 916 aa14.46□□□□□ -0.1
PCDH1-202ENST00000357517 RB1CC1Q8TDY2 1594 aa14.46□□□□□ -0.1
PCDH1-202ENST00000357517 ANP32CO43423 234 aa14.45□□□□□ -0.1
PCDH1-202ENST00000357517 VSIG10Q8N0Z9 540 aa14.45□□□□□ -0.1
PCDH1-202ENST00000357517 SIN3AQ96ST3 1273 aa14.4□□□□□ -0.11
PCDH1-202ENST00000357517 PPP4R2Q9NY27 417 aa14.38□□□□□ -0.11
PCDH1-202ENST00000357517 IPO9Q96P70 1041 aaKnown RBP14.38□□□□□ -0.11
PCDH1-202ENST00000357517 SENP3-EIF4A1A0A087X0R7 540 aa14.37□□□□□ -0.11
PCDH1-202ENST00000357517 ZMYND15Q9H091 742 aa14.36□□□□□ -0.11
PCDH1-202ENST00000357517 WRNQ14191 1432 aaPredicted RBP eCLIP14.35□□□□□ -0.11
PCDH1-202ENST00000357517 DHX57Q6P158 1386 aaKnown RBP14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms