RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 SNRPA1P09661 255 aaKnown RBP20.75■□□□□ 0.91
CCDC28A-201ENST00000332797 INTS5Q6P9B9 1019 aaKnown RBP20.75■□□□□ 0.91
CCDC28A-201ENST00000332797 WWC1Q8IX03 1113 aa20.75■□□□□ 0.91
CCDC28A-201ENST00000332797 CHL1O00533 1208 aa20.74■□□□□ 0.91
CCDC28A-201ENST00000332797 CFAP44Q96MT7 982 aa20.74■□□□□ 0.91
CCDC28A-201ENST00000332797 RPS6KA4O75676 772 aa20.73■□□□□ 0.91
CCDC28A-201ENST00000332797 NCBP3Q53F19 620 aaKnown RBP20.73■□□□□ 0.91
CCDC28A-201ENST00000332797 LAMB4A4D0S4 1761 aa20.72■□□□□ 0.91
CCDC28A-201ENST00000332797 IFT57Q9NWB7 429 aa20.72■□□□□ 0.91
CCDC28A-201ENST00000332797 ZBTB1Q9Y2K1 713 aa20.72■□□□□ 0.91
CCDC28A-201ENST00000332797 USP16Q9Y5T5 823 aa20.72■□□□□ 0.91
CCDC28A-201ENST00000332797 GNAI1P63096 354 aa20.71■□□□□ 0.91
CCDC28A-201ENST00000332797 GIGYF1O75420 1035 aaPredicted RBP20.7■□□□□ 0.9
CCDC28A-201ENST00000332797 ZNF853P0CG23 659 aa20.7■□□□□ 0.9
CCDC28A-201ENST00000332797 CANXP27824 592 aaKnown RBP20.7■□□□□ 0.9
CCDC28A-201ENST00000332797 TRAPPC3LQ5T215 181 aa20.7■□□□□ 0.9
CCDC28A-201ENST00000332797 SLC16A10Q8TF71 515 aa20.7■□□□□ 0.9
CCDC28A-201ENST00000332797 MTFR1LQ9H019 292 aa20.7■□□□□ 0.9
CCDC28A-201ENST00000332797 MBIPQ9NS73 344 aa20.7■□□□□ 0.9
CCDC28A-201ENST00000332797 ATF5Q9Y2D1 282 aaPredicted RBP20.7■□□□□ 0.9
CCDC28A-201ENST00000332797 SOS1Q07889 1333 aaPredicted RBP20.69■□□□□ 0.9
CCDC28A-201ENST00000332797 ADRA2BP18089 450 aa20.69■□□□□ 0.9
CCDC28A-201ENST00000332797 SPON1Q9HCB6 807 aa20.69■□□□□ 0.9
CCDC28A-201ENST00000332797 LRP5O75197 1615 aa20.69■□□□□ 0.9
CCDC28A-201ENST00000332797 C4AP0C0L4 1744 aa20.69■□□□□ 0.9
CCDC28A-201ENST00000332797 A1BGP04217 495 aa20.69■□□□□ 0.9
CCDC28A-201ENST00000332797 NGEFQ8N5V2 710 aa20.69■□□□□ 0.9
CCDC28A-201ENST00000332797 ARHGEF1Q92888 912 aaKnown RBP20.69■□□□□ 0.9
CCDC28A-201ENST00000332797 COL15A1P39059 1388 aa20.67■□□□□ 0.9
CCDC28A-201ENST00000332797 RFC4P35249 363 aa20.67■□□□□ 0.9
CCDC28A-201ENST00000332797 PIP4K2AP48426 406 aaPredicted RBP20.67■□□□□ 0.9
CCDC28A-201ENST00000332797 KRT24Q2M2I5 525 aa20.67■□□□□ 0.9
CCDC28A-201ENST00000332797 MSL1Q68DK7 614 aa20.67■□□□□ 0.9
CCDC28A-201ENST00000332797 ZNF330Q9Y3S2 320 aaPredicted RBP20.67■□□□□ 0.9
CCDC28A-201ENST00000332797 IL16Q14005 1332 aa20.66■□□□□ 0.9
CCDC28A-201ENST00000332797 WDR63Q8IWG1 891 aa20.66■□□□□ 0.9
CCDC28A-201ENST00000332797 TSR2Q969E8 191 aaKnown RBP20.65■□□□□ 0.9
CCDC28A-201ENST00000332797 EIF2S2P20042 333 aaKnown RBP20.63■□□□□ 0.89
CCDC28A-201ENST00000332797 IL6STP40189 918 aaPredicted RBP20.63■□□□□ 0.89
CCDC28A-201ENST00000332797 PTGER2P43116 358 aa20.63■□□□□ 0.89
CCDC28A-201ENST00000332797 EIF5P55010 431 aaKnown RBP20.63■□□□□ 0.89
CCDC28A-201ENST00000332797 SRP68Q9UHB9 627 aaKnown RBP20.63■□□□□ 0.89
CCDC28A-201ENST00000332797 NBPF26B4DH59 902 aa20.62■□□□□ 0.89
CCDC28A-201ENST00000332797 NBPF10Q6P3W6 841 aaKnown RBP20.62■□□□□ 0.89
CCDC28A-201ENST00000332797 NPM2Q86SE8 214 aaKnown RBP20.62■□□□□ 0.89
CCDC28A-201ENST00000332797 NBPF15Q8N660 670 aa20.62■□□□□ 0.89
CCDC28A-201ENST00000332797 SRCAPQ6ZRS2 3230 aa20.62■□□□□ 0.89
CCDC28A-201ENST00000332797 COL24A1Q17RW2 1714 aa20.62■□□□□ 0.89
CCDC28A-201ENST00000332797 USP42Q9H9J4 1324 aaKnown RBP20.62■□□□□ 0.89
CCDC28A-201ENST00000332797 NECTIN2Q92692 538 aa20.62■□□□□ 0.89
CCDC28A-201ENST00000332797 ZNF521Q96K83 1311 aa20.61■□□□□ 0.89
CCDC28A-201ENST00000332797 A0A087WZG4 1122 aa20.61■□□□□ 0.89
CCDC28A-201ENST00000332797 ZPR1O75312 459 aa20.61■□□□□ 0.89
CCDC28A-201ENST00000332797 POLD1P28340 1107 aa20.61■□□□□ 0.89
CCDC28A-201ENST00000332797 DUSP27Q5VZP5 1158 aa20.61■□□□□ 0.89
CCDC28A-201ENST00000332797 SGIP1Q9BQI5 828 aa20.61■□□□□ 0.89
CCDC28A-201ENST00000332797 PPP1R1BQ9UD71 204 aaPredicted RBP20.61■□□□□ 0.89
CCDC28A-201ENST00000332797 GYS1P13807 737 aa20.6■□□□□ 0.89
CCDC28A-201ENST00000332797 ARXQ96QS3 562 aa20.6■□□□□ 0.89
CCDC28A-201ENST00000332797 FANCIQ9NVI1 1328 aa20.6■□□□□ 0.89
CCDC28A-201ENST00000332797 ELL2O00472 640 aaPredicted RBP20.59■□□□□ 0.89
CCDC28A-201ENST00000332797 HOXB7P09629 217 aa20.59■□□□□ 0.89
CCDC28A-201ENST00000332797 MYL6BP14649 208 aa20.59■□□□□ 0.89
CCDC28A-201ENST00000332797 USPL1Q5W0Q7 1092 aa20.59■□□□□ 0.89
CCDC28A-201ENST00000332797 SPINK5Q9NQ38 1064 aaPredicted RBP20.59■□□□□ 0.89
CCDC28A-201ENST00000332797 NARFQ9UHQ1 456 aa20.59■□□□□ 0.89
CCDC28A-201ENST00000332797 SCN7AQ01118 1682 aa20.58■□□□□ 0.89
CCDC28A-201ENST00000332797 HDGFL1Q5TGJ6 251 aa20.58■□□□□ 0.89
CCDC28A-201ENST00000332797 C8orf58Q8NAV2 365 aa20.58■□□□□ 0.89
CCDC28A-201ENST00000332797 TBC1D2BQ9UPU7 963 aa20.58■□□□□ 0.89
CCDC28A-201ENST00000332797 ERBB4Q15303 1308 aa20.58■□□□□ 0.88
CCDC28A-201ENST00000332797 DZIP3Q86Y13 1208 aaKnown RBP20.57■□□□□ 0.88
CCDC28A-201ENST00000332797 NLGN1Q8N2Q7 840 aa20.57■□□□□ 0.88
CCDC28A-201ENST00000332797 MYH16Q9H6N6 1097 aa20.57■□□□□ 0.88
CCDC28A-201ENST00000332797 FKBP8Q14318 412 aa20.56■□□□□ 0.88
CCDC28A-201ENST00000332797 GOLGA2Q08379 1002 aa20.56■□□□□ 0.88
CCDC28A-201ENST00000332797 TSPYL6Q8N831 410 aa20.56■□□□□ 0.88
CCDC28A-201ENST00000332797 BCORQ6W2J9 1755 aa20.55■□□□□ 0.88
CCDC28A-201ENST00000332797 ANXA1P04083 346 aa20.55■□□□□ 0.88
CCDC28A-201ENST00000332797 MMP10P09238 476 aa20.55■□□□□ 0.88
CCDC28A-201ENST00000332797 PDIA6Q15084 440 aa20.55■□□□□ 0.88
CCDC28A-201ENST00000332797 PROSER3Q2NL68 480 aa20.55■□□□□ 0.88
CCDC28A-201ENST00000332797 CHPF2Q9P2E5 772 aa20.55■□□□□ 0.88
CCDC28A-201ENST00000332797 CAMTA2O94983 1202 aa20.54■□□□□ 0.88
CCDC28A-201ENST00000332797 HNRNPUQ00839 825 aaKnown RBP eCLIP20.54■□□□□ 0.88
CCDC28A-201ENST00000332797 BCL2L12Q9HB09 334 aa20.54■□□□□ 0.88
CCDC28A-201ENST00000332797 TWISTNBQ3B726 338 aaPredicted RBP20.53■□□□□ 0.88
CCDC28A-201ENST00000332797 EXOSC9Q06265 439 aaKnown RBP20.52■□□□□ 0.88
CCDC28A-201ENST00000332797 KLHL34Q8N239 644 aa20.52■□□□□ 0.88
CCDC28A-201ENST00000332797 DDX21Q9NR30 783 aaKnown RBP eCLIP20.52■□□□□ 0.88
CCDC28A-201ENST00000332797 E9PSI1 815 aa20.51■□□□□ 0.87
CCDC28A-201ENST00000332797 KIF6Q6ZMV9 814 aa20.51■□□□□ 0.87
CCDC28A-201ENST00000332797 TTLL7Q6ZT98 887 aa20.51■□□□□ 0.87
CCDC28A-201ENST00000332797 DBF4Q9UBU7 674 aaPredicted RBP20.51■□□□□ 0.87
CCDC28A-201ENST00000332797 LRP10Q7Z4F1 713 aa20.5■□□□□ 0.87
CCDC28A-201ENST00000332797 PARP3Q9Y6F1 533 aa20.5■□□□□ 0.87
CCDC28A-201ENST00000332797 CCDC30Q5VVM6 783 aa20.5■□□□□ 0.87
CCDC28A-201ENST00000332797 BICDL1Q6ZP65 573 aa20.5■□□□□ 0.87
CCDC28A-201ENST00000332797 CDCA7LQ96GN5 454 aa20.5■□□□□ 0.87
CCDC28A-201ENST00000332797 DDR1Q08345 913 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms