RNA–Protein interactions for RNA: ENST00000277817.10

HERC4-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,371 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-201ENST00000277817 USP17L12C9JPN9 530 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 USP17L11C9JVI0 530 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 USP17L21D6R901 530 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 USP17L18D6R9N7 530 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 USP17L22D6RA61 530 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 USP17L17D6RBQ6 530 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 USP17L19D6RCP7 530 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 USP17L20D6RJB6 530 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 C3orf80F5H4A9 247 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 USP17L24Q0WX57 530 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 CCDC144BQ3MJ40 725 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 TRAF7Q6Q0C0 670 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 WWC1Q8IX03 1113 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 OCSTAMPQ9BR26 566 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 MYOM1P52179 1685 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 COL18A1P39060 1754 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 FAN1Q9Y2M0 1017 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 DLC1Q96QB1 1528 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 PTPN12Q05209 780 aaKnown RBP3.91□□□□□ -1.78
HERC4-201ENST00000277817 CTDSPL2Q05D32 466 aa3.91□□□□□ -1.78
HERC4-201ENST00000277817 TECPR2O15040 1411 aa3.9□□□□□ -1.78
HERC4-201ENST00000277817 IRX5P78411 483 aaPredicted RBP3.9□□□□□ -1.78
HERC4-201ENST00000277817 FAM161AQ3B820 660 aa3.9□□□□□ -1.78
HERC4-201ENST00000277817 ARHGAP5Q13017 1502 aa3.9□□□□□ -1.78
HERC4-201ENST00000277817 PIK3CDO00329 1044 aa3.9□□□□□ -1.79
HERC4-201ENST00000277817 NDUFV2P19404 249 aa3.9□□□□□ -1.79
HERC4-201ENST00000277817 FAM174AQ8TBP5 190 aa3.9□□□□□ -1.79
HERC4-201ENST00000277817 SHANK3Q9BYB0 1731 aa3.9□□□□□ -1.79
HERC4-201ENST00000277817 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.9□□□□□ -1.79
HERC4-201ENST00000277817 TPD52L2O43399 206 aaKnown RBP3.9□□□□□ -1.79
HERC4-201ENST00000277817 CLSTN1O94985 981 aa3.9□□□□□ -1.79
HERC4-201ENST00000277817 FXR2P51116 673 aaKnown RBP eCLIP3.9□□□□□ -1.79
HERC4-201ENST00000277817 SIX5Q8N196 739 aa3.9□□□□□ -1.79
HERC4-201ENST00000277817 NLRP7Q8WX94 980 aa3.9□□□□□ -1.79
HERC4-201ENST00000277817 COL26A1Q96A83 441 aa3.9□□□□□ -1.79
HERC4-201ENST00000277817 RPS6KL1Q9Y6S9 549 aa3.9□□□□□ -1.79
HERC4-201ENST00000277817 ASXL1Q8IXJ9 1541 aa3.9□□□□□ -1.79
HERC4-201ENST00000277817 AKAP12Q02952 1782 aa3.9□□□□□ -1.79
HERC4-201ENST00000277817 POTEEQ6S8J3 1075 aa3.89□□□□□ -1.79
HERC4-201ENST00000277817 KLHL42Q9P2K6 505 aa3.89□□□□□ -1.79
HERC4-201ENST00000277817 MAGEC2Q9UBF1 373 aaPredicted RBP3.89□□□□□ -1.79
HERC4-201ENST00000277817 SETD5Q9C0A6 1442 aa3.89□□□□□ -1.79
HERC4-201ENST00000277817 DHX29Q7Z478 1369 aaKnown RBP3.89□□□□□ -1.79
HERC4-201ENST00000277817 POTECB2RU33 542 aa3.89□□□□□ -1.79
HERC4-201ENST00000277817 ZBTB7BO15156 539 aaPredicted RBP3.89□□□□□ -1.79
HERC4-201ENST00000277817 MAFGO15525 162 aa3.89□□□□□ -1.79
HERC4-201ENST00000277817 FGRP09769 529 aa3.89□□□□□ -1.79
HERC4-201ENST00000277817 SCNN1AP37088 669 aa3.89□□□□□ -1.79
HERC4-201ENST00000277817 DDX10Q13206 875 aaKnown RBP3.89□□□□□ -1.79
HERC4-201ENST00000277817 HSD3B2P26439 372 aa3.89□□□□□ -1.79
HERC4-201ENST00000277817 PLEKHG6Q3KR16 790 aa3.89□□□□□ -1.79
HERC4-201ENST00000277817 ARHGEF28Q8N1W1 1705 aaKnown RBP3.89□□□□□ -1.79
HERC4-201ENST00000277817 APLP1P51693 650 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 PPP4CP60510 307 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 PTPROQ16827 1216 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 PADI6Q6TGC4 694 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 CABLES1Q8TDN4 633 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 P4HBP07237 508 aaKnown RBP3.88□□□□□ -1.79
HERC4-201ENST00000277817 POU3F3P20264 500 aaPredicted RBP3.88□□□□□ -1.79
HERC4-201ENST00000277817 MAP3K9P80192 1104 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 DAB2P98082 770 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 MKL1Q969V6 931 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 RBCK1Q9BYM8 510 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 PTCH1Q13635 1447 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 SCAPERQ9BY12 1400 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 CFAP99D6REC4 459 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 TREHO43280 583 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 EIF3JO75822 258 aaKnown RBP3.88□□□□□ -1.79
HERC4-201ENST00000277817 TMC4Q7Z404 712 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 CERKQ8TCT0 537 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 TEX2Q8IWB9 1127 aa3.88□□□□□ -1.79
HERC4-201ENST00000277817 SRA1Q9HD15 236 aaKnown RBP3.88□□□□□ -1.79
HERC4-201ENST00000277817 TYW1Q9NV66 732 aaKnown RBP3.88□□□□□ -1.79
HERC4-201ENST00000277817 C1orf167Q5SNV9 1468 aa3.87□□□□□ -1.79
HERC4-201ENST00000277817 USP17L3A6NCW0 530 aa3.87□□□□□ -1.79
HERC4-201ENST00000277817 USP17L4A6NCW7 530 aa3.87□□□□□ -1.79
HERC4-201ENST00000277817 MAP4K4O95819 1239 aaPredicted RBP3.87□□□□□ -1.79
HERC4-201ENST00000277817 PLEKHG4Q58EX7 1191 aa3.87□□□□□ -1.79
HERC4-201ENST00000277817 USP17L2Q6R6M4 530 aa3.87□□□□□ -1.79
HERC4-201ENST00000277817 CLEC4GQ6UXB4 293 aa3.87□□□□□ -1.79
HERC4-201ENST00000277817 USP17L1Q7RTZ2 530 aa3.87□□□□□ -1.79
HERC4-201ENST00000277817 ALKBH8Q96BT7 664 aaKnown RBP3.87□□□□□ -1.79
HERC4-201ENST00000277817 PSMD1Q99460 953 aa3.87□□□□□ -1.79
HERC4-201ENST00000277817 CFHR5Q9BXR6 569 aa3.87□□□□□ -1.79
HERC4-201ENST00000277817 PRM3Q9NNZ6 103 aa3.87□□□□□ -1.79
HERC4-201ENST00000277817 CXXC1Q9P0U4 656 aaPredicted RBP3.87□□□□□ -1.79
HERC4-201ENST00000277817 NOP58Q9Y2X3 529 aaKnown RBP3.87□□□□□ -1.79
HERC4-201ENST00000277817 LY75O60449 1722 aa3.87□□□□□ -1.79
HERC4-201ENST00000277817 C4orf46Q504U0 113 aa3.87□□□□□ -1.79
HERC4-201ENST00000277817 IRF2BPLQ9H1B7 796 aa3.87□□□□□ -1.79
HERC4-201ENST00000277817 DCTN4Q9UJW0 460 aa3.87□□□□□ -1.79
HERC4-201ENST00000277817 COL14A1Q05707 1796 aaKnown RBP3.87□□□□□ -1.79
HERC4-201ENST00000277817 HOXA2O43364 376 aa3.86□□□□□ -1.79
HERC4-201ENST00000277817 ERCC5P28715 1186 aaPredicted RBP3.86□□□□□ -1.79
HERC4-201ENST00000277817 CLTCL1P53675 1640 aa3.86□□□□□ -1.79
HERC4-201ENST00000277817 PRSS12P56730 875 aa3.86□□□□□ -1.79
HERC4-201ENST00000277817 CLDN10P78369 228 aa3.86□□□□□ -1.79
HERC4-201ENST00000277817 MCF2L2Q86YR7 1114 aa3.86□□□□□ -1.79
HERC4-201ENST00000277817 PMM1Q92871 262 aa3.86□□□□□ -1.79
HERC4-201ENST00000277817 TMEM94Q12767 1356 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms