RNA–Protein interactions for RNA: ENSMUST00000209611.1

Sh3rf1-202, Transcript of E3 ubiquitin-protein ligase SH3RF1, mousemouse

TSL 1 (best) BASIC

Gene Sh3rf1, Length 4,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1-202ENSMUST00000209611 Mmp8O70138 465 aa11.69□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Mum1Q6DID5 682 aa11.69□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Anapc15-psA0A140T8L6 141 aa11.69□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Efcab2Q9CQ46 164 aa11.69□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Trpm3Q5F4S9 1721 aa11.69□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Atg4a-psA0A0G2JFS9 396 aa11.69□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Atg4aQ8C9S8 396 aa11.69□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 PtprvP70289 1705 aa11.69□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 AU015836B2RUM3 263 aa11.68□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Mcmdc2E9Q956 681 aa11.68□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Nup153E9Q3G8 1462 aaKnown RBP11.68□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Tfip11Q9ERA6 838 aaKnown RBP11.68□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Ppip5k2Q6ZQB6 1129 aa11.68□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Ier5O89113 308 aa11.68□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Bend3Q6PAL0 825 aa11.68□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Arfgef2A2A5R2 1792 aa11.68□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Smg7Q5RJH6 1138 aaKnown RBP11.67□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Prkab2Q6PAM0 271 aa11.67□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Amigo3Q8C2S7 508 aa11.67□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Rbm10Q99KG3 930 aaKnown RBP11.67□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Tet3Q8BG87 1668 aa11.67□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Cdhr2E9Q7P9 1308 aa11.67□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Cct4P80315 539 aaKnown RBP11.67□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Erc2Q6PH08 957 aa11.67□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Rfx1P48377 963 aa11.66□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Brpf1B2RRD7 1212 aa11.66□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 ApobrQ8VBT6 942 aa11.66□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Bicc1Q99MQ1 977 aaKnown RBP11.66□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Elp1Q7TT37 1333 aaKnown RBP11.66□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Iqsec3Q3TES0 1195 aa11.66□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Ahnak2E9PYB0 1738 aaKnown RBP11.66□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Morc2aQ69ZX6 1030 aa11.66□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Ankle2Q6P1H6 964 aa11.66□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Pdia3P27773 505 aaKnown RBP11.65□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Grm8P47743 908 aa11.65□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 1700010I14RikQ7TPG0 532 aa11.65□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Lmbr1lQ9D1E5 489 aa11.65□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 DccP70211 1447 aa11.65□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Cyp2d11P24457 504 aa11.65□□□□□ -0.54
Sh3rf1-202ENSMUST00000209611 Larp1Q6ZQ58 1072 aaKnown RBP11.65□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Phf23Q8BSN5 401 aa11.65□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Ssfa2Q922B9 1252 aa11.65□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 VgfQ0VGU4 617 aa11.64□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Gm10093D3YYI8 482 aa11.64□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Hdac1O09106 482 aaKnown RBP11.64□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 AppP12023 770 aa11.64□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Nkx2-3P97334 362 aa11.64□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 HellsQ60848 821 aa11.64□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Slc39a6Q8C145 765 aa11.64□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Q8C5K5 320 aa11.64□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Fkbp5Q64378 456 aa11.64□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Smc4Q8CG47 1286 aa11.64□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Smim5Q8BT42 78 aa11.63□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Scn4aQ9ER60 1841 aa11.63□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Pnpla7A2AJ88 1352 aa11.63□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Adgrb1Q3UHD1 1582 aa11.63□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Nucb1Q02819 459 aaKnown RBP11.63□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Ddx58Q6Q899 926 aa11.63□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Stard3nlQ9DCI3 235 aa11.63□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 PigbQ9JJQ0 542 aa11.63□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Nol10Q5RJG1 687 aaKnown RBP11.63□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Chmp3Q9CQ10 224 aa11.63□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Stk3Q9JI10 497 aa11.63□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Col18a1P39061 1774 aa11.62□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Plcb2A3KGF7 1181 aa11.62□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Tlr7P58681 1050 aa11.62□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Rsph3aQ3UFY4 516 aa11.62□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Gnl3lQ6PGG6 577 aaKnown RBP11.62□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Ccnl1Q52KE7 532 aaKnown RBP11.62□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Soga3Q6NZL0 945 aa11.62□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Neurod6P48986 337 aa11.61□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 GpkowQ56A08 488 aa11.61□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Ppp6r3Q922D4 844 aa11.61□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Atp10bB1AWN4 1474 aa11.61□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 NexnQ7TPW1 607 aa11.61□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Adcy9P51830 1353 aa11.61□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Pa2g4P50580 394 aaKnown RBP11.61□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 RestQ8VIG1 1082 aa11.61□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Terf2O35144 541 aa11.6□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Slx1bQ8BX32 270 aa11.6□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Robo1O89026 1612 aa11.6□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Pard3Q99NH2 1333 aa11.6□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Noc3lQ8VI84 807 aaKnown RBP11.6□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Siglec1Q62230 1695 aa11.6□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Casq1O09165 405 aa11.6□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Stk11ipQ3TAA7 1072 aa11.6□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 AceP09470 1312 aa11.6□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Tom1O88746 492 aa11.59□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 MecomP14404 1042 aa11.59□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Exoc5Q3TPX4 708 aa11.59□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Slit1Q80TR4 1531 aa11.59□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Flt4P35917 1363 aa11.59□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Brwd3A2AHJ4 1799 aa11.59□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 CalcaP70160 136 aa11.59□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Wnk3Q80XP9 1757 aa11.59□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Ttll7A4Q9F0 912 aa11.59□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Cers3Q1A3B0 383 aa11.59□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Gnat3Q3V3I2 354 aa11.59□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Tgfb1i1Q62219 461 aa11.59□□□□□ -0.55
Sh3rf1-202ENSMUST00000209611 Brf1Q8CFK2 676 aa11.59□□□□□ -0.55
Retrieved 100 of 22,080 RNA–protein pairs in 25.8 ms