RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 ELMOD3Q96FG2 381 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 DUX5Q96PT3 197 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 EGFL8Q99944 293 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 CHRDL1Q9BU40 450 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 FNDC11Q9BVV2 318 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 TEKT3Q9BXF9 490 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 KRTAP9-9Q9BYP9 154 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 KRTAP9-4Q9BYQ2 154 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 UBXN6Q9BZV1 441 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 ZYG11BQ9C0D3 744 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 ALX4Q9H161 411 aaPredicted RBP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 METTL9Q9H1A3 318 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 SLCO5A1Q9H2Y9 848 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 ASB7Q9H672 318 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 C11orf49Q9H6J7 331 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 CALHM2Q9HA72 323 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 VAT1LQ9HCJ6 419 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 KLHL1Q9NR64 748 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 TLR9Q9NR96 1032 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 PDGFCQ9NRA1 345 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 YAE1D1Q9NRH1 226 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 TMEM248Q9NWD8 314 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 DPP3Q9NY33 737 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 RDH8Q9NYR8 311 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 STMN3Q9NZ72 180 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 UPB1Q9UBR1 384 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 FBXW11Q9UKB1 542 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 WIF1Q9Y5W5 379 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 B3GALT1Q9Y5Z6 326 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 CNTNAP5Q8WYK1 1306 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 SCAPERQ9BY12 1400 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 ADGRL3Q9HAR2 1447 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 FITM1A5D6W6 292 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 MBD3L4A6NDZ8 208 aaPredicted RBP4.05□□□□□ -1.76
BRCA1-220ENST00000492859 MBD3L3A6NE82 208 aaPredicted RBP4.05□□□□□ -1.76
BRCA1-220ENST00000492859 KIAA1324LA8MWY0 1029 aaPredicted RBP4.05□□□□□ -1.76
BRCA1-220ENST00000492859 GRXCR1A8MXD5 290 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 SHISA8B8ZZ34 492 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 H7C4K7 107 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 IFNL4K9M1U5 179 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 NFIBO00712 420 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 SCDO00767 359 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 MID1O15344 667 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 ADAM12O43184 909 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 TRIM13O60858 407 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 CTNSO60931 367 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 LYPLA2O95372 231 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 KRT75O95678 551 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 LY86O95711 162 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 NDUFB10O96000 172 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 PIGRP01833 764 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 CRHP06850 196 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 GP1BAP07359 652 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 ELFN1P0C7U0 828 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 SPATA31D3P0C874 917 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 CBSLP0DN79 551 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 CTSAP10619 480 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 ITGAMP11215 1152 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 FGF5P12034 268 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 NR2C1P13056 603 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 ENO3P13929 434 aaPredicted RBP4.05□□□□□ -1.76
BRCA1-220ENST00000492859 FOSL2P15408 326 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 GNAZP19086 355 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 PAICSP22234 425 aaKnown RBP4.05□□□□□ -1.76
BRCA1-220ENST00000492859 UBA1P22314 1058 aaKnown RBP4.05□□□□□ -1.76
BRCA1-220ENST00000492859 DDX6P26196 483 aaKnown RBP eCLIP4.05□□□□□ -1.76
BRCA1-220ENST00000492859 EPHB2P29323 1055 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 PRDX5P30044 214 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 CHRNA5P30532 468 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 MPIP34949 423 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 ADRA1AP35348 466 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 MAS1LP35410 378 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 CBSP35520 551 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 CPOXP36551 454 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 MMP12P39900 470 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 CEACAM3P40198 252 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 HOXA1P49639 335 aaPredicted RBP4.05□□□□□ -1.76
BRCA1-220ENST00000492859 CNN1P51911 297 aaKnown RBP4.05□□□□□ -1.76
BRCA1-220ENST00000492859 ELLP55199 621 aaPredicted RBP4.05□□□□□ -1.76
BRCA1-220ENST00000492859 C21orf59P57076 290 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 SHC2P98077 582 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 ECT2LQ008S8 904 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 IL9RQ01113 521 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 CSTF1Q05048 431 aaKnown RBP4.05□□□□□ -1.76
BRCA1-220ENST00000492859 RBPJQ06330 500 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 ILF3Q12906 894 aaKnown RBP eCLIP4.05□□□□□ -1.76
BRCA1-220ENST00000492859 PTPRCAPQ14761 206 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 EXT1Q16394 746 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 EXOC3L4Q17RC7 722 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 SLC25A53Q5H9E4 307 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 ALS2CLQ60I27 953 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 ZSCAN25Q6NSZ9 544 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 C17orf99Q6UX52 265 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 DLEU7Q6UYE1 221 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 LIPIQ6XZB0 460 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 RNF207Q6ZRF8 634 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 SPATA31D4Q6ZUB0 917 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 USP43Q70EL4 1123 aa4.05□□□□□ -1.76
BRCA1-220ENST00000492859 NIPA1Q7RTP0 329 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms