RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 ADAMTS3O15072 1205 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 HNRNPCL4P0DMR1 293 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 CCND3P30281 292 aaPredicted RBP13.3□□□□□ -0.28
COL4A1-201ENST00000375820 KCNC4Q03721 635 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 OR4K1Q8NGD4 311 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 ITPAQ9BY32 194 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 ZDHHC4Q9NPG8 344 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 DUXAA6NLW8 204 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 IRAK2O43187 625 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 SPARCP09486 303 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 HOXB6P17509 224 aaKnown RBP13.3□□□□□ -0.28
COL4A1-201ENST00000375820 BMP8BP34820 402 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 NRIP1P48552 1158 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 RABL3Q5HYI8 236 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 ARSKQ6UWY0 536 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 BMP8AQ7Z5Y6 402 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 PHC2Q8IXK0 858 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 COQ8AQ8NI60 647 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 DCAKDQ8WVC6 231 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 SEC14L1Q92503 715 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 MRIQ9BWK5 157 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.3□□□□□ -0.28
COL4A1-201ENST00000375820 IL21RQ9HBE5 538 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 FZD3Q9NPG1 666 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 DCAF12L1Q5VU92 463 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 CMTM7Q96FZ5 175 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 FBXL18Q96ME1 805 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 ARHGAP9Q9BRR9 750 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 TSSK6Q9BXA6 273 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 SH2B3Q9UQQ2 575 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 PCDHB14Q9Y5E9 798 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 FRMPD1Q5SYB0 1578 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 GABRDO14764 452 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 FHP07954 510 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 HTR7P34969 479 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 SMSP52788 366 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 CDK6Q00534 326 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 RAB39AQ14964 217 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 SH3D19Q5HYK7 790 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 MTFR2Q6P444 385 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 DNAAF1Q8NEP3 725 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 MOCOSQ96EN8 888 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 CGREF1Q99674 301 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 C17orf62Q9BQA9 187 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 CUEDC1Q9NWM3 386 aaPredicted RBP13.3□□□□□ -0.28
COL4A1-201ENST00000375820 IGLV3-22A0A075B6J6 115 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 AOC2O75106 756 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 MAGEA11P43364 429 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 CD97P48960 835 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 GNG2P59768 71 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 RPA4Q13156 261 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 EFR3AQ14156 821 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 TMEM164Q5U3C3 297 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 PHTF2Q8N3S3 785 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 SLC22A17Q8WUG5 538 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 ZNF641Q96N77 438 aaPredicted RBP13.29□□□□□ -0.28
COL4A1-201ENST00000375820 ILVBLA1L0T0 632 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 I3L521 148 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 AHSGP02765 367 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 ELK4P28324 431 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 ZNF41P51814 821 aaPredicted RBP13.29□□□□□ -0.28
COL4A1-201ENST00000375820 CCINQ13939 588 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 ALPK1Q96QP1 1244 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 STRA6Q9BX79 667 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 RAB11FIP5Q9BXF6 653 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 SLC7A8Q9UHI5 535 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 CCDC163A0A0D9SF12 145 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 ENTPD6O75354 484 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 CKMT1AP12532 417 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 ADAM15Q13444 863 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 TLCD1Q96CP7 247 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 TWNKQ96RR1 684 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 METTL21EPA6NDL7 271 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 EOMESO95936 686 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 SFTPBP07988 381 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 ANXA8P13928 327 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 SLC9A3P48764 834 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 CRHR2Q13324 411 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 RBM39Q14498 530 aaKnown RBP13.29□□□□□ -0.28
COL4A1-201ENST00000375820 SPIN4Q56A73 249 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 OR2T5Q6IEZ7 315 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 OR6N2Q8NGY6 317 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 OR2T29Q8NH02 315 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 C11orf84Q9BUA3 381 aaPredicted RBP13.29□□□□□ -0.28
COL4A1-201ENST00000375820 MRPL15Q9P015 296 aaKnown RBP13.29□□□□□ -0.28
COL4A1-201ENST00000375820 M0R2N6 131 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 MANBAO00462 879 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 HTR1AP08908 422 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 TM4SF1P30408 202 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 PGGT1BP53609 377 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 CDH11P55287 796 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 PSMA6P60900 246 aaKnown RBP13.29□□□□□ -0.28
COL4A1-201ENST00000375820 GRIK2Q13002 908 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 TBC1D15Q8TC07 691 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 SLC6A7Q99884 636 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 SGIP1Q9BQI5 828 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 DPAGT1Q9H3H5 408 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 TIGARQ9NQ88 270 aa13.29□□□□□ -0.28
COL4A1-201ENST00000375820 CPNE6O95741 557 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 UNGP13051 313 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms