RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 MMP28Q9H239 520 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 IL37Q9NZH6 218 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 CASZ1Q86V15 1759 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 TEX13CA0A0J9YWL9 993 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 A0A1B0GVM2 712 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 GRM6O15303 877 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 SLC22A5O76082 557 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 IFNA21P01568 189 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 GALK2Q01415 458 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 CLCQ05315 142 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 LAPTM5Q13571 262 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 C14orf28Q4W4Y0 310 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 MTFR2Q6P444 385 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 BEND5Q7L4P6 421 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 ADAMTSL2Q86TH1 951 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 ATCAYQ86WG3 371 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 DCUN1D3Q8IWE4 304 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 BCL7CQ8WUZ0 217 aaPredicted RBP12.92□□□□□ -0.34
USP40-208ENST00000450966 ST8SIA2Q92186 375 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 TMEM175Q9BSA9 504 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 TNKS2Q9H2K2 1166 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 KLHL21Q9UJP4 597 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 CNTN6Q9UQ52 1028 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 PCDHGB2Q9Y5G2 931 aa12.92□□□□□ -0.34
USP40-208ENST00000450966 PTPRJQ12913 1337 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 KLRG2A4D1S0 409 aaPredicted RBP12.91□□□□□ -0.34
USP40-208ENST00000450966 SLC1A7O00341 560 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 TOR1AO14656 332 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 GCATO75600 419 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 ARL6IP5O75915 188 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 IL1BP01584 269 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 CCL5P13501 91 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 KIR3DL1P43629 444 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 KCNAB2Q13303 367 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 ZNF169Q14929 603 aaPredicted RBP12.91□□□□□ -0.34
USP40-208ENST00000450966 GTPBP3Q969Y2 492 aaKnown RBP12.91□□□□□ -0.34
USP40-208ENST00000450966 SDHAF2Q9NX18 166 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 SOHLH2Q9NX45 425 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 NUBP2Q9Y5Y2 271 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 E5RJQ4 531 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 SLC34A2O95436 690 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 GTF2F2P13984 249 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 HK1P19367 917 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 ZNF143P52747 638 aaPredicted RBP12.91□□□□□ -0.34
USP40-208ENST00000450966 AP1S1P61966 158 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 HEPACAMQ14CZ8 416 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 TOMM20Q15388 145 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 SF3A2Q15428 464 aaKnown RBP12.91□□□□□ -0.34
USP40-208ENST00000450966 AP5B1Q2VPB7 878 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 FAM205BPQ63HN1 556 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 SLC22A10Q63ZE4 541 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 BEX1Q9HBH7 125 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 VWA7Q9Y334 891 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 TLR4O00206 839 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 RPL4P36578 427 aaKnown RBP12.91□□□□□ -0.34
USP40-208ENST00000450966 AFF3P51826 1226 aaKnown RBP12.91□□□□□ -0.34
USP40-208ENST00000450966 OXA1LQ15070 435 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 TIGD5Q53EQ6 642 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 AGMOQ6ZNB7 445 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 BBS1Q8NFJ9 593 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 TIFAQ96CG3 184 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 CXorf40BQ96DE9 158 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 LRCH3Q96II8 777 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 ACBD6Q9BR61 282 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 CRB3Q9BUF7 120 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 STUB1Q9UNE7 303 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 ANXA2P2A6NMY6 339 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 ANXA2P07355 339 aaKnown RBP12.91□□□□□ -0.34
USP40-208ENST00000450966 CHRM5P08912 532 aaPredicted RBP12.91□□□□□ -0.34
USP40-208ENST00000450966 INHBCP55103 352 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 BAK1Q16611 211 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 RFTN2Q52LD8 501 aaPredicted RBP12.91□□□□□ -0.34
USP40-208ENST00000450966 TPGS2Q68CL5 300 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 BEND7Q8N7W2 519 aaPredicted RBP12.91□□□□□ -0.34
USP40-208ENST00000450966 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.91□□□□□ -0.34
USP40-208ENST00000450966 ZNF597Q96LX8 424 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 TCF25Q9BQ70 676 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 DUSP16Q9BY84 665 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 PCDHB9Q9Y5E1 797 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 PCDHB3Q9Y5E6 796 aa12.91□□□□□ -0.34
USP40-208ENST00000450966 GADD45GO95257 159 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 GIMD1P0DJR0 217 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 CCR4P51679 360 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 NRG1Q02297 640 aaPredicted RBP12.9□□□□□ -0.34
USP40-208ENST00000450966 LCP2Q13094 533 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 PIWIL3Q7Z3Z3 882 aaKnown RBP12.9□□□□□ -0.34
USP40-208ENST00000450966 FAM35AQ86V20 835 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 NDNFQ8TB73 568 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 TMEM203Q969S6 136 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 UTP4Q969X6 686 aaKnown RBP12.9□□□□□ -0.34
USP40-208ENST00000450966 LIN37Q96GY3 246 aaPredicted RBP12.9□□□□□ -0.34
USP40-208ENST00000450966 CACNG6Q9BXT2 260 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 XPNPEP1Q9NQW7 623 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 OXSMQ9NWU1 459 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 PADI3Q9ULW8 664 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 ZNF142P52746 1687 aaPredicted RBP12.9□□□□□ -0.34
USP40-208ENST00000450966 hCG_1807616A0A1W2PRN6 198 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 CACNB4O00305 520 aaPredicted RBP12.9□□□□□ -0.34
USP40-208ENST00000450966 CA5AP35218 305 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 ALG11Q2TAA5 492 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms