RNA–Protein interactions for RNA: ENST00000550893.2

SCAF11-214, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 507 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-214ENST00000550893 KDELR1P24390 212 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 GJC1P36383 396 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 NUDT1P36639 197 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 NR4A2P43354 598 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 DNA2P51530 1060 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 STC1P52823 247 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 KIAA1024LP59773 190 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 IFI35P80217 286 aaPredicted RBP4.79□□□□□ -1.64
SCAF11-214ENST00000550893 TXNL4AP83876 142 aaKnown RBP4.79□□□□□ -1.64
SCAF11-214ENST00000550893 CFHR1Q03591 330 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 NSUN2Q08J23 767 aaKnown RBP eCLIP4.79□□□□□ -1.64
SCAF11-214ENST00000550893 OVGP1Q12889 678 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 OLIG2Q13516 323 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 PDE1CQ14123 709 aaPredicted RBP4.79□□□□□ -1.64
SCAF11-214ENST00000550893 PIGHQ14442 188 aaPredicted RBP4.79□□□□□ -1.64
SCAF11-214ENST00000550893 KCTD19Q17RG1 926 aaPredicted RBP4.79□□□□□ -1.64
SCAF11-214ENST00000550893 PXDC1Q5TGL8 231 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 HES3Q5TGS1 186 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 KDELC1Q6UW63 502 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 TRIM74Q86UV6 250 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 PARGQ86W56 976 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 FSTL5Q8N475 847 aaPredicted RBP4.79□□□□□ -1.64
SCAF11-214ENST00000550893 NANOGP1Q8N7R0 232 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 FAM71DQ8N9W8 422 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 ACRBPQ8NEB7 543 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 ANKRD20A12PQ8NF67 263 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 OR8K1Q8NGG5 319 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 MBD3L2Q8NHZ7 208 aaPredicted RBP4.79□□□□□ -1.64
SCAF11-214ENST00000550893 HCAR2Q8TDS4 363 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 GANCQ8TET4 914 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 SETD7Q8WTS6 366 aaKnown RBP4.79□□□□□ -1.64
SCAF11-214ENST00000550893 PATE1Q8WXA2 126 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 COQ8BQ96D53 544 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 IQCDQ96DY2 449 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 DTD2Q96FN9 168 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 OXNAD1Q96HP4 312 aaPredicted RBP4.79□□□□□ -1.64
SCAF11-214ENST00000550893 COX14Q96I36 57 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 ZNF599Q96NL3 588 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 RNF157Q96PX1 679 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 LYSMD1Q96S90 227 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 LGMNQ99538 433 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 TMEM79Q9BSE2 394 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 CALN1Q9BXU9 219 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 SLC25A32Q9H2D1 315 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 CATSPERBQ9H7T0 1116 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 C10orf88Q9H8K7 445 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 HEYLQ9NQ87 328 aaPredicted RBP4.79□□□□□ -1.64
SCAF11-214ENST00000550893 TMEM51Q9NW97 253 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 RCOR3Q9P2K3 495 aaPredicted RBP4.79□□□□□ -1.64
SCAF11-214ENST00000550893 UVRAGQ9P2Y5 699 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 NCKAP1Q9Y2A7 1128 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 PCDHGA1Q9Y5H4 931 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 USP9XQ93008 2570 aaPredicted RBP4.79□□□□□ -1.64
SCAF11-214ENST00000550893 PTPN13Q12923 2485 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 CCDC88CQ9P219 2028 aa4.79□□□□□ -1.64
SCAF11-214ENST00000550893 TNRC6AQ8NDV7 1962 aaKnown RBP4.78□□□□□ -1.64
SCAF11-214ENST00000550893 A0A0J9YYE9 177 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 TRABD2BA6NFA1 517 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 ARHGAP42A6NI28 874 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 A8MX80 341 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 LMO7DNF2Z398 122 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 KCNK1O00180 336 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 AQP9O43315 295 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 PALMO75781 387 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 WDR47O94967 919 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 TRBC1P01850 177 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 TPM2P07951 284 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 CCDC172P0C7W6 258 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 KRT10P13645 584 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 CTPS1P17812 591 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 PTPN3P26045 913 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 AKT2P31751 481 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 HNF1BP35680 557 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 NNMTP40261 264 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 RABIFP47224 123 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 POLD2P49005 469 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 PEX5P50542 639 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 GEMIN4P57678 1058 aaKnown RBP4.78□□□□□ -1.64
SCAF11-214ENST00000550893 AP1S1P61966 158 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 SRSF6Q13247 344 aaKnown RBP4.78□□□□□ -1.64
SCAF11-214ENST00000550893 C1orf61Q13536 156 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 RFTN1Q14699 578 aaPredicted RBP4.78□□□□□ -1.64
SCAF11-214ENST00000550893 NFATC4Q14934 902 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 NR1D2Q14995 579 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 DEFB133Q30KQ1 61 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 FILIP1LQ4L180 1135 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 ZNF658BQ4V348 819 aaPredicted RBP4.78□□□□□ -1.64
SCAF11-214ENST00000550893 BOLA3Q53S33 107 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 HENMT1Q5T8I9 393 aaKnown RBP4.78□□□□□ -1.64
SCAF11-214ENST00000550893 LRRC66Q68CR7 880 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 PPP1R2P3Q6NXS1 205 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 BRAT1Q6PJG6 821 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 CRTC1Q6UUV9 634 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 TMCO3Q6UWJ1 677 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 C11orf96Q7Z7L8 435 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 VSIG1Q86XK7 387 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 TTC30BQ8N4P2 665 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 ATPAF2Q8N5M1 289 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 C9orf106Q8NAJ2 232 aa4.78□□□□□ -1.64
SCAF11-214ENST00000550893 SPATA22Q8NHS9 363 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms