RNA–Protein interactions for RNA: ENST00000550893.2

SCAF11-214, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 507 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-214ENST00000550893 AEBP2Q6ZN18 517 aaPredicted RBP25.14■■□□□ 1.62
SCAF11-214ENST00000550893 CHIC1Q5VXU3 224 aa24.31■■□□□ 1.48
SCAF11-214ENST00000550893 PHF23Q9BUL5 403 aaPredicted RBP21.38■■□□□ 1.01
SCAF11-214ENST00000550893 SENP3Q9H4L4 574 aaPredicted RBP21.32■■□□□ 1
SCAF11-214ENST00000550893 FOXD1Q16676 465 aa19.85■□□□□ 0.77
SCAF11-214ENST00000550893 PLPPR3Q6T4P5 718 aa19.63■□□□□ 0.73
SCAF11-214ENST00000550893 PPP6R1Q9UPN7 881 aa18.95■□□□□ 0.62
SCAF11-214ENST00000550893 ADRA2BP18089 450 aa18.91■□□□□ 0.62
SCAF11-214ENST00000550893 POTEDQ86YR6 584 aa18.84■□□□□ 0.61
SCAF11-214ENST00000550893 MSH5O43196 834 aa18.77■□□□□ 0.6
SCAF11-214ENST00000550893 PIAS4Q8N2W9 510 aaPredicted RBP18.65■□□□□ 0.58
SCAF11-214ENST00000550893 PPP4R3CPQ6ZMV5 832 aa17.29■□□□□ 0.36
SCAF11-214ENST00000550893 SCAF1Q9H7N4 1312 aaKnown RBP17.25■□□□□ 0.35
SCAF11-214ENST00000550893 MAPK8IP2Q13387 824 aaPredicted RBP17.24■□□□□ 0.35
SCAF11-214ENST00000550893 DMRT2Q9Y5R5 561 aa16.99■□□□□ 0.31
SCAF11-214ENST00000550893 CNKSR2Q8WXI2 1034 aa16.84■□□□□ 0.29
SCAF11-214ENST00000550893 NCBP3Q53F19 620 aaKnown RBP16.74■□□□□ 0.27
SCAF11-214ENST00000550893 KCNA4P22459 653 aa16.64■□□□□ 0.25
SCAF11-214ENST00000550893 HOXD11P31277 338 aaPredicted RBP16.56■□□□□ 0.24
SCAF11-214ENST00000550893 RNF216Q9NWF9 866 aaPredicted RBP16.56■□□□□ 0.24
SCAF11-214ENST00000550893 NPM3O75607 178 aaKnown RBP16.53■□□□□ 0.24
SCAF11-214ENST00000550893 CACNB1Q02641 598 aaPredicted RBP16.32■□□□□ 0.2
SCAF11-214ENST00000550893 DCAF8L1A6NGE4 600 aa16.28■□□□□ 0.2
SCAF11-214ENST00000550893 DNAJC5BQ9UF47 199 aa16.05■□□□□ 0.16
SCAF11-214ENST00000550893 RNF39Q9H2S5 420 aa15.87■□□□□ 0.13
SCAF11-214ENST00000550893 SLC4A1APQ9BWU0 796 aaKnown RBP15.79■□□□□ 0.12
SCAF11-214ENST00000550893 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.78■□□□□ 0.127e-7■□□□□ 9.1
SCAF11-214ENST00000550893 C1QBPQ07021 282 aaKnown RBP15.7■□□□□ 0.1
SCAF11-214ENST00000550893 SLC4A2P04920 1241 aa15.67■□□□□ 0.1
SCAF11-214ENST00000550893 U3KPZ7 1027 aaPredicted RBP15.51■□□□□ 0.07
SCAF11-214ENST00000550893 FOXD4L1Q9NU39 408 aa15.36■□□□□ 0.05
SCAF11-214ENST00000550893 ZBTB22O15209 634 aa15.32■□□□□ 0.04
SCAF11-214ENST00000550893 MYCNP04198 464 aaPredicted RBP15.25■□□□□ 0.03
SCAF11-214ENST00000550893 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.2■□□□□ 0.02
SCAF11-214ENST00000550893 HNRNPUL2Q1KMD3 747 aaKnown RBP15.2■□□□□ 0.02
SCAF11-214ENST00000550893 SPINK5Q9NQ38 1064 aaPredicted RBP15.16■□□□□ 0.02
SCAF11-214ENST00000550893 SAMD1Q6SPF0 538 aaPredicted RBP15.14■□□□□ 0.01
SCAF11-214ENST00000550893 EHMT2Q96KQ7 1210 aa15.11■□□□□ 0.01
SCAF11-214ENST00000550893 CAPN15O75808 1086 aa15.09■□□□□ 0.01
SCAF11-214ENST00000550893 APLP2Q06481 763 aa15.08■□□□□ 0
SCAF11-214ENST00000550893 CSRNP3Q8WYN3 585 aa15.05■□□□□ -0
SCAF11-214ENST00000550893 TRHP20396 242 aaPredicted RBP14.97□□□□□ -0.01
SCAF11-214ENST00000550893 ZNF219Q9P2Y4 722 aaPredicted RBP14.93□□□□□ -0.02
SCAF11-214ENST00000550893 ATF5Q9Y2D1 282 aaPredicted RBP14.91□□□□□ -0.02
SCAF11-214ENST00000550893 DSG3P32926 999 aa14.9□□□□□ -0.02
SCAF11-214ENST00000550893 ATXN8OSP0DMR3 200 aa14.83□□□□□ -0.04
SCAF11-214ENST00000550893 ABCB7O75027 752 aa14.8□□□□□ -0.04
SCAF11-214ENST00000550893 POTEHQ6S545 545 aa14.74□□□□□ -0.05
SCAF11-214ENST00000550893 POLA2Q14181 598 aa14.68□□□□□ -0.06
SCAF11-214ENST00000550893 ZBTB12Q9Y330 459 aaPredicted RBP14.38□□□□□ -0.11
SCAF11-214ENST00000550893 FBLN2P98095 1184 aa14.25□□□□□ -0.13
SCAF11-214ENST00000550893 MKRN4PQ13434 485 aaPredicted RBP14.24□□□□□ -0.13
SCAF11-214ENST00000550893 RBM42Q9BTD8 480 aaKnown RBP14.22□□□□□ -0.13
SCAF11-214ENST00000550893 OSCARQ8IYS5 282 aa14.19□□□□□ -0.14
SCAF11-214ENST00000550893 SPDYE2BA6NHP3 402 aa13.99□□□□□ -0.17
SCAF11-214ENST00000550893 SPDYE6P0CI01 402 aa13.99□□□□□ -0.17
SCAF11-214ENST00000550893 SPDYE2Q495Y8 402 aa13.99□□□□□ -0.17
SCAF11-214ENST00000550893 CHRDL2Q6WN34 429 aa13.96□□□□□ -0.17
SCAF11-214ENST00000550893 AKT1S1Q96B36 256 aa13.96□□□□□ -0.17
SCAF11-214ENST00000550893 ZNF692Q9BU19 519 aaPredicted RBP13.92□□□□□ -0.18
SCAF11-214ENST00000550893 SSUH2Q9Y2M2 353 aa13.87□□□□□ -0.19
SCAF11-214ENST00000550893 REM2Q8IYK8 340 aaPredicted RBP13.84□□□□□ -0.19
SCAF11-214ENST00000550893 SPDYE4A6NLX3 237 aa13.79□□□□□ -0.2
SCAF11-214ENST00000550893 PABPN1Q86U42 306 aaKnown RBP eCLIP13.73□□□□□ -0.21
SCAF11-214ENST00000550893 PITPNM1O00562 1244 aa13.69□□□□□ -0.22
SCAF11-214ENST00000550893 SP7Q8TDD2 431 aaPredicted RBP13.65□□□□□ -0.22
SCAF11-214ENST00000550893 SPDYE1Q8NFV5 336 aaPredicted RBP13.63□□□□□ -0.23
SCAF11-214ENST00000550893 FKBP8Q14318 412 aa13.6□□□□□ -0.23
SCAF11-214ENST00000550893 CLEC11AQ9Y240 323 aa13.6□□□□□ -0.23
SCAF11-214ENST00000550893 PROM2Q8N271 834 aa13.53□□□□□ -0.24
SCAF11-214ENST00000550893 PIP4P2Q8N4L2 257 aa13.49□□□□□ -0.25
SCAF11-214ENST00000550893 FXR2P51116 673 aaKnown RBP eCLIP13.48□□□□□ -0.255e-6■□□□□ 8.9
SCAF11-214ENST00000550893 HAX1O00165 279 aa13.44□□□□□ -0.26
SCAF11-214ENST00000550893 PRR29P0C7W0 189 aa13.44□□□□□ -0.26
SCAF11-214ENST00000550893 STAG3Q9UJ98 1225 aa13.43□□□□□ -0.26
SCAF11-214ENST00000550893 PRKAR2AP13861 404 aaKnown RBP13.34□□□□□ -0.27
SCAF11-214ENST00000550893 CHADLQ6NUI6 762 aa13.31□□□□□ -0.28
SCAF11-214ENST00000550893 CREBZFQ9NS37 354 aa13.24□□□□□ -0.29
SCAF11-214ENST00000550893 FBXO3Q9UK99 471 aa13.15□□□□□ -0.3
SCAF11-214ENST00000550893 FARP1Q9Y4F1 1045 aaPredicted RBP13.15□□□□□ -0.3
SCAF11-214ENST00000550893 MIER1Q8N108 512 aa13.11□□□□□ -0.31
SCAF11-214ENST00000550893 MNX1P50219 401 aaPredicted RBP13.07□□□□□ -0.32
SCAF11-214ENST00000550893 EVX2Q03828 476 aa13.05□□□□□ -0.32
SCAF11-214ENST00000550893 PLCD3Q8N3E9 789 aa13.05□□□□□ -0.32
SCAF11-214ENST00000550893 C19orf67A6NJJ6 358 aa13.02□□□□□ -0.33
SCAF11-214ENST00000550893 PLEKHG5O94827 1062 aa13.02□□□□□ -0.33
SCAF11-214ENST00000550893 VASPP50552 380 aaPredicted RBP12.99□□□□□ -0.33
SCAF11-214ENST00000550893 NPM1P06748 294 aaKnown RBP eCLIP12.97□□□□□ -0.33
SCAF11-214ENST00000550893 CD44P16070 742 aaKnown RBP12.94□□□□□ -0.34
SCAF11-214ENST00000550893 ZBTB47Q9UFB7 747 aaPredicted RBP12.9□□□□□ -0.34
SCAF11-214ENST00000550893 GABBR2O75899 941 aa12.85□□□□□ -0.35
SCAF11-214ENST00000550893 ZRANB1Q9UGI0 708 aa12.84□□□□□ -0.35
SCAF11-214ENST00000550893 KLHL34Q8N239 644 aa12.83□□□□□ -0.36
SCAF11-214ENST00000550893 IFNLR1Q8IU57 520 aaPredicted RBP12.82□□□□□ -0.36
SCAF11-214ENST00000550893 PAK3O75914 559 aaPredicted RBP12.8□□□□□ -0.36
SCAF11-214ENST00000550893 NUBP1P53384 320 aa12.8□□□□□ -0.36
SCAF11-214ENST00000550893 LHX8Q68G74 356 aa12.8□□□□□ -0.36
SCAF11-214ENST00000550893 RASEFQ8IZ41 740 aa12.8□□□□□ -0.36
SCAF11-214ENST00000550893 TSPYL2Q9H2G4 693 aaPredicted RBP12.78□□□□□ -0.36
SCAF11-214ENST00000550893 ZNF579Q8NAF0 562 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 228.1 ms