RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 ZNF717Q9BY31 904 aaPredicted RBP13.25□□□□□ -0.29
USP49-201ENST00000373006 OR2B2Q9GZK3 357 aa13.25□□□□□ -0.29
USP49-201ENST00000373006 CRISPLD1Q9H336 500 aa13.25□□□□□ -0.29
USP49-201ENST00000373006 PRM3Q9NNZ6 103 aa13.25□□□□□ -0.29
USP49-201ENST00000373006 ARL15Q9NXU5 204 aa13.25□□□□□ -0.29
USP49-201ENST00000373006 TRPS1Q9UHF7 1281 aa13.25□□□□□ -0.29
USP49-201ENST00000373006 RAPGEFL1Q9UHV5 662 aa13.25□□□□□ -0.29
USP49-201ENST00000373006 PCDHB5Q9Y5E4 795 aa13.25□□□□□ -0.29
USP49-201ENST00000373006 MRPS14O60783 128 aaKnown RBP13.24□□□□□ -0.29
USP49-201ENST00000373006 IGLV3-27P01718 113 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 SEMG1P04279 462 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 OR1E2P47887 323 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 ITGA1P56199 1179 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 DMC1Q14565 340 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 TTLL9Q3SXZ7 439 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 ZNF648Q5T619 568 aaPredicted RBP13.24□□□□□ -0.29
USP49-201ENST00000373006 ZNF605Q86T29 641 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 PARK7Q99497 189 aaKnown RBP13.24□□□□□ -0.29
USP49-201ENST00000373006 PCDH10Q9P2E7 1040 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 MKLN1Q9UL63 735 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 PCDHB8Q9UN66 801 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 GABRQQ9UN88 632 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 BTBD3Q9Y2F9 522 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 LYVE1Q9Y5Y7 322 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 GREB1Q4ZG55 1949 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 CENPXA8MT69 81 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 MAGEB17A8MXT2 336 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 H3BQ06 376 aaPredicted RBP13.24□□□□□ -0.29
USP49-201ENST00000373006 YY2O15391 372 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 CPNE3O75131 537 aaKnown RBP13.24□□□□□ -0.29
USP49-201ENST00000373006 EPN2O95208 641 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 RHOCP08134 193 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 MLLT3P42568 568 aaPredicted RBP13.24□□□□□ -0.29
USP49-201ENST00000373006 IRF3Q14653 427 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 SIGIRRQ6IA17 410 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 ZNF544Q6NX49 715 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 ZSWIM9Q86XI8 627 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 DNAJB8Q8NHS0 232 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 C7orf34Q96L11 122 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 TBC1D24Q9ULP9 559 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 PCDHB1Q9Y5F3 818 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 DNMT3AQ9Y6K1 912 aaPredicted RBP13.24□□□□□ -0.29
USP49-201ENST00000373006 FAM172BPA6NC97 362 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 WDR47O94967 919 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 ABCB1P08183 1280 aaPredicted RBP13.24□□□□□ -0.29
USP49-201ENST00000373006 ADRA2AP08913 450 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 GGT2P36268 569 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 CRYBA2P53672 197 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 SNRPD2P62316 118 aaKnown RBP13.24□□□□□ -0.29
USP49-201ENST00000373006 NFE2Q16621 373 aaPredicted RBP13.24□□□□□ -0.29
USP49-201ENST00000373006 TSTQ16762 297 aaKnown RBP13.24□□□□□ -0.29
USP49-201ENST00000373006 ZXDCQ2QGD7 858 aaPredicted RBP13.24□□□□□ -0.29
USP49-201ENST00000373006 IQCCQ4KMZ1 466 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 RNF219Q5W0B1 726 aaPredicted RBP13.24□□□□□ -0.29
USP49-201ENST00000373006 UBQLNLQ8IYU4 475 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 ZBTB2Q8N680 514 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 NIPSNAP1Q9BPW8 284 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 EXOSC4Q9NPD3 245 aaKnown RBP13.24□□□□□ -0.29
USP49-201ENST00000373006 MS4A12Q9NXJ0 267 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 ASIC5Q9NY37 505 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 MUTYHQ9UIF7 546 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 OGDHLQ9ULD0 1010 aa13.24□□□□□ -0.29
USP49-201ENST00000373006 MKI67P46013 3256 aaKnown RBP13.24□□□□□ -0.29
USP49-201ENST00000373006 H3BM21 787 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 H3BNC9 293 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 TNFRSF11BO00300 401 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 ACSL4O60488 711 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 ZNF623O75123 536 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 HOXC8P31273 242 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 TNFSF8P32971 234 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 SOX6P35712 828 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 PIK3CBP42338 1070 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 RPIAP49247 311 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 KRR1Q13601 381 aaKnown RBP13.23□□□□□ -0.29
USP49-201ENST00000373006 DOC2BQ14184 412 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 TAB1Q15750 504 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 DUOXA1Q1HG43 343 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 PUS10Q3MIT2 529 aaKnown RBP13.23□□□□□ -0.29
USP49-201ENST00000373006 CTXN3Q4LDR2 81 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 C10orf62Q5T681 223 aaPredicted RBP13.23□□□□□ -0.29
USP49-201ENST00000373006 SLX4IPQ5VYV7 408 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 LRRC66Q68CR7 880 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 FAM217AQ8IXS0 508 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 NELL1Q92832 810 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 BHMTQ93088 406 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 CCDC120Q96HB5 630 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 TRNT1Q96Q11 434 aaKnown RBP13.23□□□□□ -0.29
USP49-201ENST00000373006 RRAGCQ9HB90 399 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 OLA1Q9NTK5 396 aaKnown RBP13.23□□□□□ -0.29
USP49-201ENST00000373006 TOR4AQ9NXH8 423 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 ZNF226Q9NYT6 803 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 TAS2R9Q9NYW1 312 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 MAT2BQ9NZL9 334 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 TEKT2Q9UIF3 430 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 FCF1Q9Y324 198 aaKnown RBP13.23□□□□□ -0.29
USP49-201ENST00000373006 PNMA8CA0A1B0GUJ8 204 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 H7C0S8 307 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 SEMA3DO95025 777 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 PRPS2P11908 318 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 PSMA3P25788 255 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms