RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 GAS2L1Q99501 681 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 TMEM175Q9BSA9 504 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 DDX4Q9NQI0 724 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SEC14L3Q9UDX4 400 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 FEM1BQ9UK73 627 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 TNFSF13BQ9Y275 285 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 PLIN4Q96Q06 1357 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 RPS10-NUDT3A0A1W2PQS6 291 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 IRGMA1A4Y4 181 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 TTC24A2A3L6 582 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 BTBD17A6NE02 478 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 H3BQ06 376 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 WWP2O00308 870 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 MSH4O15457 936 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 FABP7O15540 132 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SLC28A2O43868 658 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 HOXC4P09017 264 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 PPP3CBP16298 524 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 CHRNB2P17787 502 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 PCMT1P22061 227 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 FPR3P25089 353 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 ELK4P28324 431 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 NUDT6P53370 316 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 CTBP2P56545 445 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 TAP2Q03519 686 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 DGKZQ13574 1117 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 USF2Q15853 346 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 EPHX4Q8IUS5 362 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 TRIM48Q8IWZ4 208 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 PRMT6Q96LA8 375 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 CHCHD6Q9BRQ6 235 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF385DQ9H6B1 395 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SPON1Q9HCB6 807 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 UBE2TQ9NPD8 197 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 ACOT13Q9NPJ3 140 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 C14orf119Q9NWQ9 140 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 VAPAQ9P0L0 249 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 LEF1Q9UJU2 399 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 NOCTQ9UK39 431 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 ELOA3CA0A087WX78 387 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 EFCAB7A8K855 629 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 RPS6KA4O75676 772 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 AKAP3O75969 853 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 RECQL5O94762 991 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 HTR1EP28566 365 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 GKP32189 559 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 CDH11P55287 796 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 ACTR1AP61163 376 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 LMAN2Q12907 356 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SYT16Q17RD7 645 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 MLIPQ5VWP3 458 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 LAMTOR1Q6IAA8 161 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 FAM131BQ86XD5 332 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 PTRH1Q86Y79 214 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SNX29P2Q8IUI4 249 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 DCUN1D3Q8IWE4 304 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 DNAJC10Q8IXB1 793 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF655Q8N720 491 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 EFHBQ8N7U6 833 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 FAM83FQ8NEG4 500 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 BTN2A2Q8WVV5 523 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 ECHDC3Q96DC8 303 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 OTUB2Q96DC9 234 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 BSCL2Q96G97 398 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 TMPRSS13Q9BYE2 586 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 GSX1Q9H4S2 264 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 TMEM8AQ9HCN3 771 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 IL1RAPQ9NPH3 570 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 PCDHA11Q9Y5I1 949 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SLC22A23A1A5C7 686 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 C5orf58C9J3I9 102 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 CBX4O00257 560 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TNFRSF10BO14763 440 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TP73O15350 636 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PLOD3O60568 738 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 SLC34A2O95436 690 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 MT-CYBP00156 380 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 OTCP00480 354 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ACAA1P09110 424 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 POU3F3P20264 500 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 GCGRP47871 477 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PSPHP78330 225 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 SORDQ00796 357 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ACSM1Q08AH1 577 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ECH1Q13011 328 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 GAGE1Q13065 139 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PIGHQ14442 188 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TSNQ15631 228 aaKnown RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 CATSPEREQ5SY80 951 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 IDNKQ5T6J7 187 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PRAMEF13Q5VWM6 474 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 DHRS7BQ6IAN0 325 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 DARS2Q6PI48 645 aaKnown RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 RABEPKQ7Z6M1 372 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TPRA1Q86W33 373 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 CMTR2Q8IYT2 770 aaKnown RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 CENPLQ8N0S6 344 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 RNF139Q8WU17 664 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 HTR3CQ8WXA8 447 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ACOT12Q8WYK0 555 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms