RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 VPS4AQ9UN37 437 aa15.8■□□□□ 0.12
CTCF-201ENST00000264010 U3KQV3 271 aa15.8■□□□□ 0.12
CTCF-201ENST00000264010 SH3PXD2BA1X283 911 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 MAGEB17A8MXT2 336 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 PCDH8O95206 1070 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 RPN2P04844 631 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 ALDH3A2P51648 485 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 LIPJQ5W064 366 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 CRTC3Q6UUV7 619 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 PTRH1Q86Y79 214 aaKnown RBP15.79■□□□□ 0.12
CTCF-201ENST00000264010 PHACTR4Q8IZ21 702 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 CELF5Q8N6W0 485 aaKnown RBP15.79■□□□□ 0.12
CTCF-201ENST00000264010 FBXL20Q96IG2 436 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 UHRF1Q96T88 793 aaPredicted RBP15.79■□□□□ 0.12
CTCF-201ENST00000264010 RAD9AQ99638 391 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 FAIMQ9NVQ4 179 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 ZNF225Q9UK10 706 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 USP34Q70CQ2 3546 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 TMCC2O75069 709 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 IFNA14P01570 189 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 SERPIND1P05546 499 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 C1SP09871 688 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 PSMA3P25788 255 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 UBE2UQ5VVX9 321 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 NOXRED1Q6NXP6 359 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 RFLNAQ6ZTI6 216 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 Q8N9G6 341 aaPredicted RBP15.79■□□□□ 0.12
CTCF-201ENST00000264010 RORBQ92753 470 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 VAPAQ9P0L0 249 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 IFT80Q9P2H3 777 aaPredicted RBP15.79■□□□□ 0.12
CTCF-201ENST00000264010 TSPAN6O43657 245 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 JUPP14923 745 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 RCVRNP35243 200 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 PREPP48147 710 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 ARSFP54793 590 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 HMBOX1Q6NT76 420 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 R3HCC1LQ7Z5L2 792 aaKnown RBP15.79■□□□□ 0.12
CTCF-201ENST00000264010 KRT78Q8N1N4 520 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 ASB11Q8WXH4 323 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 TFAP2CQ92754 450 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 EID2BQ96D98 161 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 ZNF224Q9NZL3 707 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 CCL26Q9Y258 94 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 ASF1AQ9Y294 204 aa15.79■□□□□ 0.12
CTCF-201ENST00000264010 BMP10O95393 424 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 NR4A2P43354 598 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 FPGSQ05932 587 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 TMEM115Q12893 351 aaPredicted RBP15.78■□□□□ 0.12
CTCF-201ENST00000264010 OR5K1Q8NHB7 308 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 FAR1Q8WVX9 515 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 APOL4Q9BPW4 351 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 EPB41L1Q9H4G0 881 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 ZNF556Q9HAH1 456 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 CLIC1O00299 241 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 CYP7B1O75881 506 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 HNRNPA1P09651 372 aaKnown RBP eCLIP15.78■□□□□ 0.12
CTCF-201ENST00000264010 CD97P48960 835 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 DUOXA1Q1HG43 343 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 P3H2Q8IVL5 708 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 ZDHHC21Q8IVQ6 265 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 IQCF2Q8IXL9 164 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 TAGAPQ8N103 731 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 PNPT1Q8TCS8 783 aaKnown RBP15.78■□□□□ 0.12
CTCF-201ENST00000264010 BTN2A2Q8WVV5 523 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 ZNF689Q96CS4 500 aaPredicted RBP15.78■□□□□ 0.12
CTCF-201ENST00000264010 DUSP26Q9BV47 211 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 OR2AG1Q9H205 316 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 TOR4AQ9NXH8 423 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 CDC14AQ9UNH5 594 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 PRKAB1Q9Y478 270 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 NYNRINQ9P2P1 1898 aaKnown RBP15.78■□□□□ 0.12
CTCF-201ENST00000264010 MYF6P23409 242 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 CRATP43155 626 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 BDKRB1P46663 353 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 RUNX1T1Q06455 604 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 DGUOKQ16854 277 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 ZNF648Q5T619 568 aaPredicted RBP15.78■□□□□ 0.12
CTCF-201ENST00000264010 KLHL17Q6TDP4 642 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 TRIM46Q7Z4K8 759 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 HSD11B1LQ7Z5J1 315 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 ADAMTS19Q8TE59 1207 aa15.78■□□□□ 0.12
CTCF-201ENST00000264010 ZNF514Q96K75 400 aaPredicted RBP15.78■□□□□ 0.12
CTCF-201ENST00000264010 DNMT3BQ9UBC3 853 aaKnown RBP15.78■□□□□ 0.12
CTCF-201ENST00000264010 CLDN25C9JDP6 229 aa15.77■□□□□ 0.12
CTCF-201ENST00000264010 PRMT3O60678 531 aa15.77■□□□□ 0.12
CTCF-201ENST00000264010 SNAP29O95721 258 aa15.77■□□□□ 0.12
CTCF-201ENST00000264010 TFAP2AP05549 437 aa15.77■□□□□ 0.12
CTCF-201ENST00000264010 CSTF3Q12996 717 aaKnown RBP15.77■□□□□ 0.12
CTCF-201ENST00000264010 SPANXN2Q5MJ10 180 aa15.77■□□□□ 0.12
CTCF-201ENST00000264010 TICAM1Q8IUC6 712 aa15.77■□□□□ 0.12
CTCF-201ENST00000264010 MRPL43Q8N983 215 aaKnown RBP15.77■□□□□ 0.12
CTCF-201ENST00000264010 GAB3Q8WWW8 586 aa15.77■□□□□ 0.12
CTCF-201ENST00000264010 GTF2H4Q92759 462 aa15.77■□□□□ 0.12
CTCF-201ENST00000264010 AURKBQ96GD4 344 aaPredicted RBP15.77■□□□□ 0.12
CTCF-201ENST00000264010 ACPTQ9BZG2 426 aa15.77■□□□□ 0.12
CTCF-201ENST00000264010 ZNF221Q9UK13 617 aa15.77■□□□□ 0.12
CTCF-201ENST00000264010 SAMHD1Q9Y3Z3 626 aaKnown RBP15.77■□□□□ 0.12
CTCF-201ENST00000264010 LHCGRP22888 699 aa15.77■□□□□ 0.12
CTCF-201ENST00000264010 BMPR1AP36894 532 aa15.77■□□□□ 0.12
CTCF-201ENST00000264010 NTHL1P78549 312 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms