RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 NUCB1Q02818 461 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 WASHC5Q12768 1159 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 RALGDSQ12967 914 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 MCMDC2Q4G0Z9 681 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 PDLIM3Q53GG5 364 aaPredicted RBP4.57□□□□□ -1.68
NUP88-213ENST00000576862 RBPMS2Q6ZRY4 209 aaKnown RBP4.57□□□□□ -1.68
NUP88-213ENST00000576862 LCA5Q86VQ0 697 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 IQCHQ86VS3 1027 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 LSMEM2Q8N112 164 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 ZNF485Q8NCK3 441 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 DBF4BQ8NFT6 615 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 TAF15Q92804 592 aaKnown RBP eCLIP4.57□□□□□ -1.68
NUP88-213ENST00000576862 CCDC47Q96A33 483 aaKnown RBP4.57□□□□□ -1.68
NUP88-213ENST00000576862 AZIN2Q96A70 460 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 MOB3AQ96BX8 217 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 THOC1Q96FV9 657 aaKnown RBP4.57□□□□□ -1.68
NUP88-213ENST00000576862 MAGED4Q96JG8 741 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 C10orf90Q96M02 699 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 LINC00479Q96M42 142 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 MUS81Q96NY9 551 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 FEVQ99581 238 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 FUCA2Q9BTY2 467 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 THAP2Q9H0W7 228 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 TRPV4Q9HBA0 871 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 EPHA6Q9UF33 1036 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 TNNQ9UQP3 1299 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 WDR83OSQ9Y284 106 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 EXOGQ9Y2C4 368 aaKnown RBP4.57□□□□□ -1.68
NUP88-213ENST00000576862 PPP2R2CQ9Y2T4 447 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 ARHGAP31Q2M1Z3 1444 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 CNTLNQ9NXG0 1405 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 UBE2CO00762 179 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 ATP5BP06576 529 aaKnown RBP4.56□□□□□ -1.68
NUP88-213ENST00000576862 DARSP14868 501 aaKnown RBP4.56□□□□□ -1.68
NUP88-213ENST00000576862 CD22P20273 847 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 CPT2P23786 658 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 PCGF2P35227 344 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 CCR10P46092 362 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 CSE1LP55060 971 aaKnown RBP4.56□□□□□ -1.68
NUP88-213ENST00000576862 AIMP1Q12904 312 aaKnown RBP4.56□□□□□ -1.68
NUP88-213ENST00000576862 VEZF1Q14119 521 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 TNIP1Q15025 636 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 TMEM266Q2M3C6 531 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 SLC35D3Q5M8T2 416 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 MFSD4BQ5TF39 518 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 TMEM207Q6UWW9 146 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 ZBTB49Q6ZSB9 765 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 HSCBQ8IWL3 235 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 ZNF614Q8N883 585 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 LSMEM1Q8N8F7 131 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 TDRD5Q8NAT2 981 aaKnown RBP4.56□□□□□ -1.68
NUP88-213ENST00000576862 XXYLT1Q8NBI6 393 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 ANP32BQ92688 251 aaKnown RBP4.56□□□□□ -1.68
NUP88-213ENST00000576862 CPNE1Q99829 537 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 CCDC3Q9BQI4 270 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 PITPNM3Q9BZ71 974 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 TLE6Q9H808 572 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 NKIRAS2Q9NYR9 191 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 E9PCH4 1651 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 TET3O43151 1660 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 PPRC1Q5VV67 1664 aaKnown RBP4.56□□□□□ -1.68
NUP88-213ENST00000576862 CLTCL1P53675 1640 aa4.56□□□□□ -1.68
NUP88-213ENST00000576862 ZNF195O14628 629 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 ARPC2O15144 300 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 GLRA3O75311 464 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 C22orf31O95567 290 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 ACSL3O95573 720 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 CSN3P07498 182 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 TYMPP19971 482 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 CSTF2P33240 577 aaKnown RBP eCLIP4.55□□□□□ -1.68
NUP88-213ENST00000576862 LEPRP48357 1165 aaKnown RBP4.55□□□□□ -1.68
NUP88-213ENST00000576862 ASCL1P50553 236 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 LIMK1P53667 647 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 CUL3Q13618 768 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 SPECC1Q5M775 1068 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 UGT3A1Q6NUS8 523 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 SLC25A47Q6Q0C1 308 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 IL27RAQ6UWB1 636 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 BTN2A1Q7KYR7 527 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 PTAR1Q7Z6K3 402 aaPredicted RBP4.55□□□□□ -1.68
NUP88-213ENST00000576862 MAML2Q8IZL2 1156 aaPredicted RBP4.55□□□□□ -1.68
NUP88-213ENST00000576862 OR13C3Q8NGS6 347 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 OR1L3Q8NH93 324 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 LRRC3BQ96PB8 259 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 TESK2Q96S53 571 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 ANP32EQ9BTT0 268 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 CLEC7AQ9BXN2 247 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 TSPY26PQ9H489 355 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 CPSF3Q9UKF6 684 aaKnown RBP4.55□□□□□ -1.68
NUP88-213ENST00000576862 WDR37Q9Y2I8 494 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 TTLL3Q9Y4R7 772 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 ANGPTL3Q9Y5C1 460 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 AGLP35573 1532 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 NRXN1Q9ULB1 1477 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 RICTORQ6R327 1708 aa4.55□□□□□ -1.68
NUP88-213ENST00000576862 NEURL4Q96JN8 1562 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 CDK2AP2O75956 126 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 MOCS3O95396 460 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 CLDN1O95832 211 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 CD27P26842 260 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms