RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 AEBP2Q6ZN18 517 aaPredicted RBP29.23■■■□□ 2.27
NUP88-213ENST00000576862 CHIC1Q5VXU3 224 aa28.53■■■□□ 2.16
NUP88-213ENST00000576862 PHF23Q9BUL5 403 aaPredicted RBP25.15■■□□□ 1.62
NUP88-213ENST00000576862 SENP3Q9H4L4 574 aaPredicted RBP24.7■■□□□ 1.54
NUP88-213ENST00000576862 PLPPR3Q6T4P5 718 aa23.15■■□□□ 1.3
NUP88-213ENST00000576862 FOXD1Q16676 465 aa22.98■■□□□ 1.27
NUP88-213ENST00000576862 PPP6R1Q9UPN7 881 aa22.18■■□□□ 1.14
NUP88-213ENST00000576862 ADRA2BP18089 450 aa22.13■■□□□ 1.13
NUP88-213ENST00000576862 PIAS4Q8N2W9 510 aaPredicted RBP21.63■■□□□ 1.05
NUP88-213ENST00000576862 MSH5O43196 834 aa21.1■□□□□ 0.97
NUP88-213ENST00000576862 PPP4R3CPQ6ZMV5 832 aa20.43■□□□□ 0.86
NUP88-213ENST00000576862 SCAF1Q9H7N4 1312 aaKnown RBP20.15■□□□□ 0.82
NUP88-213ENST00000576862 MAPK8IP2Q13387 824 aaPredicted RBP20.09■□□□□ 0.81
NUP88-213ENST00000576862 KCNA4P22459 653 aa20.03■□□□□ 0.8
NUP88-213ENST00000576862 NCBP3Q53F19 620 aaKnown RBP19.84■□□□□ 0.77
NUP88-213ENST00000576862 CNKSR2Q8WXI2 1034 aa19.83■□□□□ 0.77
NUP88-213ENST00000576862 DMRT2Q9Y5R5 561 aa19.75■□□□□ 0.75
NUP88-213ENST00000576862 NPM3O75607 178 aaKnown RBP19.64■□□□□ 0.73
NUP88-213ENST00000576862 RNF216Q9NWF9 866 aaPredicted RBP19.44■□□□□ 0.7
NUP88-213ENST00000576862 HOXD11P31277 338 aaPredicted RBP19.38■□□□□ 0.69
NUP88-213ENST00000576862 POTEDQ86YR6 584 aa19.19■□□□□ 0.66
NUP88-213ENST00000576862 DNAJC5BQ9UF47 199 aa19.07■□□□□ 0.64
NUP88-213ENST00000576862 SLC4A1APQ9BWU0 796 aaKnown RBP19.04■□□□□ 0.64
NUP88-213ENST00000576862 DCAF8L1A6NGE4 600 aa18.84■□□□□ 0.61
NUP88-213ENST00000576862 SLC4A2P04920 1241 aa18.56■□□□□ 0.56
NUP88-213ENST00000576862 EHMT2Q96KQ7 1210 aa18.55■□□□□ 0.56
NUP88-213ENST00000576862 ZBTB22O15209 634 aa18.48■□□□□ 0.55
NUP88-213ENST00000576862 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.4■□□□□ 0.54
NUP88-213ENST00000576862 CSRNP3Q8WYN3 585 aa18.38■□□□□ 0.53
NUP88-213ENST00000576862 FOXD4L1Q9NU39 408 aa18.38■□□□□ 0.53
NUP88-213ENST00000576862 U3KPZ7 1027 aaPredicted RBP18.18■□□□□ 0.5
NUP88-213ENST00000576862 RNF39Q9H2S5 420 aa18.14■□□□□ 0.49
NUP88-213ENST00000576862 MYCNP04198 464 aaPredicted RBP18.1■□□□□ 0.49
NUP88-213ENST00000576862 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.87■□□□□ 0.45
NUP88-213ENST00000576862 C1QBPQ07021 282 aaKnown RBP17.87■□□□□ 0.45
NUP88-213ENST00000576862 HNRNPUL2Q1KMD3 747 aaKnown RBP17.87■□□□□ 0.45
NUP88-213ENST00000576862 SAMD1Q6SPF0 538 aaPredicted RBP17.82■□□□□ 0.44
NUP88-213ENST00000576862 ATXN8OSP0DMR3 200 aa17.73■□□□□ 0.43
NUP88-213ENST00000576862 ATF5Q9Y2D1 282 aaPredicted RBP17.7■□□□□ 0.42
NUP88-213ENST00000576862 SPINK5Q9NQ38 1064 aaPredicted RBP17.66■□□□□ 0.42
NUP88-213ENST00000576862 APLP2Q06481 763 aa17.64■□□□□ 0.41
NUP88-213ENST00000576862 CACNB1Q02641 598 aaPredicted RBP17.58■□□□□ 0.4
NUP88-213ENST00000576862 CAPN15O75808 1086 aa17.52■□□□□ 0.4
NUP88-213ENST00000576862 TRHP20396 242 aaPredicted RBP17.46■□□□□ 0.39
NUP88-213ENST00000576862 ZNF219Q9P2Y4 722 aaPredicted RBP17.44■□□□□ 0.38
NUP88-213ENST00000576862 DSG3P32926 999 aa17.28■□□□□ 0.36
NUP88-213ENST00000576862 ABCB7O75027 752 aa17.23■□□□□ 0.35
NUP88-213ENST00000576862 POLA2Q14181 598 aa17.21■□□□□ 0.35
NUP88-213ENST00000576862 MKRN4PQ13434 485 aaPredicted RBP16.92■□□□□ 0.3
NUP88-213ENST00000576862 ZBTB12Q9Y330 459 aaPredicted RBP16.87■□□□□ 0.29
NUP88-213ENST00000576862 FBLN2P98095 1184 aa16.82■□□□□ 0.28
NUP88-213ENST00000576862 OSCARQ8IYS5 282 aa16.63■□□□□ 0.25
NUP88-213ENST00000576862 FKBP8Q14318 412 aa16.56■□□□□ 0.24
NUP88-213ENST00000576862 SPDYE4A6NLX3 237 aa16.5■□□□□ 0.23
NUP88-213ENST00000576862 SPDYE2BA6NHP3 402 aa16.45■□□□□ 0.22
NUP88-213ENST00000576862 SPDYE6P0CI01 402 aa16.45■□□□□ 0.22
NUP88-213ENST00000576862 SPDYE2Q495Y8 402 aa16.45■□□□□ 0.22
NUP88-213ENST00000576862 ZNF692Q9BU19 519 aaPredicted RBP16.4■□□□□ 0.22
NUP88-213ENST00000576862 RBM42Q9BTD8 480 aaKnown RBP16.38■□□□□ 0.21
NUP88-213ENST00000576862 SSUH2Q9Y2M2 353 aa16.37■□□□□ 0.21
NUP88-213ENST00000576862 PROM2Q8N271 834 aa16.29■□□□□ 0.2
NUP88-213ENST00000576862 AKT1S1Q96B36 256 aa16.23■□□□□ 0.19
NUP88-213ENST00000576862 PABPN1Q86U42 306 aaKnown RBP eCLIP16.2■□□□□ 0.18
NUP88-213ENST00000576862 REM2Q8IYK8 340 aaPredicted RBP16.1■□□□□ 0.17
NUP88-213ENST00000576862 SPDYE1Q8NFV5 336 aaPredicted RBP15.94■□□□□ 0.14
NUP88-213ENST00000576862 PITPNM1O00562 1244 aa15.92■□□□□ 0.14
NUP88-213ENST00000576862 FBXO3Q9UK99 471 aa15.9■□□□□ 0.14
NUP88-213ENST00000576862 STAG3Q9UJ98 1225 aa15.88■□□□□ 0.13
NUP88-213ENST00000576862 CLEC11AQ9Y240 323 aa15.87■□□□□ 0.13
NUP88-213ENST00000576862 PRR29P0C7W0 189 aa15.74■□□□□ 0.11
NUP88-213ENST00000576862 VASPP50552 380 aaPredicted RBP15.74■□□□□ 0.11
NUP88-213ENST00000576862 CHRDL2Q6WN34 429 aa15.73■□□□□ 0.11
NUP88-213ENST00000576862 FXR2P51116 673 aaKnown RBP eCLIP15.62■□□□□ 0.09
NUP88-213ENST00000576862 MIER1Q8N108 512 aa15.61■□□□□ 0.09
NUP88-213ENST00000576862 CREBZFQ9NS37 354 aa15.61■□□□□ 0.09
NUP88-213ENST00000576862 PLCD3Q8N3E9 789 aa15.58■□□□□ 0.08
NUP88-213ENST00000576862 IFNLR1Q8IU57 520 aaPredicted RBP15.57■□□□□ 0.08
NUP88-213ENST00000576862 PIP4P2Q8N4L2 257 aa15.57■□□□□ 0.08
NUP88-213ENST00000576862 CHADLQ6NUI6 762 aa15.53■□□□□ 0.08
NUP88-213ENST00000576862 PRKAR2AP13861 404 aaKnown RBP15.5■□□□□ 0.07
NUP88-213ENST00000576862 MNX1P50219 401 aaPredicted RBP15.48■□□□□ 0.07
NUP88-213ENST00000576862 PLEKHG5O94827 1062 aa15.46■□□□□ 0.07
NUP88-213ENST00000576862 KLHL34Q8N239 644 aa15.41■□□□□ 0.06
NUP88-213ENST00000576862 ZBTB47Q9UFB7 747 aaPredicted RBP15.37■□□□□ 0.05
NUP88-213ENST00000576862 FARP1Q9Y4F1 1045 aaPredicted RBP15.37■□□□□ 0.05
NUP88-213ENST00000576862 SPOCK2Q92563 424 aa15.32■□□□□ 0.04
NUP88-213ENST00000576862 NUBP1P53384 320 aa15.27■□□□□ 0.04
NUP88-213ENST00000576862 NPM1P06748 294 aaKnown RBP eCLIP15.26■□□□□ 0.03
NUP88-213ENST00000576862 POTEHQ6S545 545 aa15.19■□□□□ 0.02
NUP88-213ENST00000576862 RASEFQ8IZ41 740 aa15.19■□□□□ 0.02
NUP88-213ENST00000576862 RTN4Q9NQC3 1192 aaKnown RBP15.15■□□□□ 0.02
NUP88-213ENST00000576862 AMER1Q5JTC6 1135 aaPredicted RBP15.13■□□□□ 0.01
NUP88-213ENST00000576862 C19orf67A6NJJ6 358 aa15.08■□□□□ 0
NUP88-213ENST00000576862 FAM212AQ96EL1 285 aa15.08■□□□□ 0
NUP88-213ENST00000576862 PKD2Q13563 968 aa15.07■□□□□ 0
NUP88-213ENST00000576862 DCAF8Q5TAQ9 597 aa15.07■□□□□ 0
NUP88-213ENST00000576862 CIZ1Q9ULV3 898 aaPredicted RBP15.06■□□□□ 0
NUP88-213ENST00000576862 CD44P16070 742 aaKnown RBP15.05■□□□□ -0
NUP88-213ENST00000576862 TSPYL2Q9H2G4 693 aaPredicted RBP15.05■□□□□ -0
NUP88-213ENST00000576862 GSE1Q14687 1217 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms