RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 KCTD14Q9BQ13 255 aaPredicted RBP19.97■□□□□ 0.79
VPS28-209ENST00000528142 HAUS8Q9BT25 410 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 SPNS1Q9H2V7 528 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 SPATA7Q9P0W8 599 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 AP4S1Q9Y587 144 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 TCRBV21S2A2A0A5A6 115 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 POM121BA6NF01 834 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 AQP12BA6NM10 295 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 DFNA5O60443 496 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 PRPS1L1P21108 318 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 HTR1EP28566 365 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 SLC7A1P30825 629 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 S100A3P33764 101 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 C21orf58P58505 322 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 RPS13P62277 151 aaKnown RBP19.96■□□□□ 0.79
VPS28-209ENST00000528142 RAE1P78406 368 aaKnown RBP19.96■□□□□ 0.79
VPS28-209ENST00000528142 PLIN5Q00G26 463 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 ACSM2AQ08AH3 577 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 LAPTM5Q13571 262 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 TRIP10Q15642 601 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 MLF2Q15773 248 aaPredicted RBP19.96■□□□□ 0.79
VPS28-209ENST00000528142 THEMIS2Q5TEJ8 643 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 ACSM2BQ68CK6 577 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 IZUMO2Q6UXV1 221 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 AQP12AQ8IXF9 295 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 C2orf73Q8N5S3 287 aaPredicted RBP19.96■□□□□ 0.79
VPS28-209ENST00000528142 DENND6BQ8NEG7 585 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 PKP2Q99959 881 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 ECSITQ9BQ95 431 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 OSGEPL1Q9H4B0 414 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 COPS7BQ9H9Q2 264 aaPredicted RBP19.96■□□□□ 0.79
VPS28-209ENST00000528142 FGF22Q9HCT0 170 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 SERHLQ9NQF3 203 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 SLC25A37Q9NYZ2 338 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 MCM8Q9UJA3 840 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 MAN2B2Q9Y2E5 1009 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 TSC22D4Q9Y3Q8 395 aa19.96■□□□□ 0.79
VPS28-209ENST00000528142 TRBV5-3A0A0A0MS03 114 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 ARPC2O15144 300 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 PEX1O43933 1283 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 PRMT3O60678 531 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 CAPNS1P04632 268 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 CD72P21854 359 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 GRIA3P42263 894 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 CLDN2P57739 230 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 KIAA1024LP59773 190 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 MTAPQ13126 283 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 NUMA1Q14980 2115 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 HIST2H2ACQ16777 129 aaPredicted RBP19.95■□□□□ 0.78
VPS28-209ENST00000528142 IRAK1BP1Q5VVH5 260 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 HIST2H2AA3Q6FI13 130 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 PTCRAQ6ISU1 281 aaPredicted RBP19.95■□□□□ 0.78
VPS28-209ENST00000528142 IFNEQ86WN2 208 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 FAM129CQ86XR2 697 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 DNAJB8Q8NHS0 232 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 C12orf66Q96MD2 445 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 KLHL4Q9C0H6 718 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 GPSM3Q9Y4H4 160 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 COL6A3P12111 3177 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 C10orf142B7Z368 130 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 LRATO95237 230 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 CDH1P12830 882 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 MTPNP58546 118 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 MEF2AQ02078 507 aaPredicted RBP19.95■□□□□ 0.78
VPS28-209ENST00000528142 CLCA4Q14CN2 919 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 SF1Q15637 639 aaKnown RBP19.95■□□□□ 0.78
VPS28-209ENST00000528142 LRRC36Q1X8D7 754 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 SPPL2CQ8IUH8 684 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 SYT12Q8IV01 421 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 C1orf52Q8N6N3 182 aaKnown RBP19.95■□□□□ 0.78
VPS28-209ENST00000528142 TMEM102Q8N9M5 508 aaPredicted RBP19.95■□□□□ 0.78
VPS28-209ENST00000528142 GOLM1Q8NBJ4 401 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 FERD3LQ96RJ6 166 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 TRIM15Q9C019 465 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 PAIP1Q9H074 479 aaKnown RBP19.95■□□□□ 0.78
VPS28-209ENST00000528142 KCNH6Q9H252 994 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 VCX3BQ9H321 246 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 DMRT3Q9NQL9 472 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 SLC2A4RGQ9NR83 387 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 SIRT5Q9NXA8 310 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 USP22Q9UPT9 525 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 SNX13Q9Y5W8 968 aa19.95■□□□□ 0.78
VPS28-209ENST00000528142 A0A1W2PPV9 198 aa19.94■□□□□ 0.78
VPS28-209ENST00000528142 MYO1DO94832 1006 aa19.94■□□□□ 0.78
VPS28-209ENST00000528142 HOXB9P17482 250 aaPredicted RBP19.94■□□□□ 0.78
VPS28-209ENST00000528142 SPIN4Q56A73 249 aa19.94■□□□□ 0.78
VPS28-209ENST00000528142 RUNDC3AQ59EK9 446 aa19.94■□□□□ 0.78
VPS28-209ENST00000528142 LRIF1Q5T3J3 769 aa19.94■□□□□ 0.78
VPS28-209ENST00000528142 MSANTD1Q6ZTZ1 278 aa19.94■□□□□ 0.78
VPS28-209ENST00000528142 ZNF740Q8NDX6 193 aa19.94■□□□□ 0.78
VPS28-209ENST00000528142 SMPDL3AQ92484 453 aa19.94■□□□□ 0.78
VPS28-209ENST00000528142 BMFQ96LC9 184 aa19.94■□□□□ 0.78
VPS28-209ENST00000528142 MOSPD1Q9UJG1 213 aa19.94■□□□□ 0.78
VPS28-209ENST00000528142 TRIOO75962 3097 aa19.94■□□□□ 0.78
VPS28-209ENST00000528142 PRSS38A1L453 326 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 ZNF839A8K0R7 811 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 SH3BGRLO75368 114 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 ERN1O75460 977 aaKnown RBP19.93■□□□□ 0.78
VPS28-209ENST00000528142 IDSP22304 550 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 PIK3CBP42338 1070 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms