RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PI4K2AQ9BTU6 479 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 MMTAG2Q9BU76 263 aaKnown RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 FNDC11Q9BVV2 318 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 GTPBP2Q9BX10 602 aaKnown RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 DCLK3Q9C098 648 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 XPO4Q9C0E2 1151 aaKnown RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 NYXQ9GZU5 481 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 SLC5A7Q9GZV3 580 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 THAP9Q9H5L6 903 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 C6orf106Q9H6K1 298 aaPredicted RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 C17orf75Q9HAS0 396 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 RBM28Q9NW13 759 aaKnown RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 MCM9Q9NXL9 1143 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 AKAP7Q9P0M2 348 aaPredicted RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 RCC2Q9P258 522 aaKnown RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 HOOK1Q9UJC3 728 aaKnown RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 CPSF3Q9UKF6 684 aaKnown RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 ICAM5Q9UMF0 924 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 LOXL2Q9Y4K0 774 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 TMEM184BQ9Y519 407 aaPredicted RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 NFS1Q9Y697 457 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 NID2Q14112 1375 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 COL1A1P02452 1464 aaPredicted RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 BCL9LQ86UU0 1499 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 ANKRD36CQ5JPF3 1778 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 C4AP0C0L4 1744 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 C4BP0C0L5 1744 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 TIAM2Q8IVF5 1701 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 COL4A1P02462 1669 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 CLEC18AA5D8T8 446 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 OR6C75A6NL08 312 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 PLK4O00444 970 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 TIMM23O14925 209 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 TO15178 435 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 RGS14O43566 566 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 RTN2O75298 545 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 GCNT3O95395 438 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 PLEKHA8P1O95397 391 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 RLN1P04808 185 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 CYP1A2P05177 515 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 OR2T7P0C7T2 308 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 CALM1P0DP23 149 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 CALM2P0DP24 149 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 CALM3P0DP25 149 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 P4HA1P13674 534 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 ARSBP15848 533 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 GNAZP19086 355 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 CYP11B2P19099 503 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 WNT5AP41221 380 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 SLC9A3P48764 834 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 ASCL1P50553 236 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 SNU13P55769 128 aaKnown RBP3.95□□□□□ -1.78
VPS29-202ENST00000447578 GSDMDP57764 484 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 ST8SIA6P61647 398 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 RPS8P62241 208 aaKnown RBP3.95□□□□□ -1.78
VPS29-202ENST00000447578 POLR2LP62875 67 aaKnown RBP3.95□□□□□ -1.78
VPS29-202ENST00000447578 ASIC1P78348 528 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 ABATP80404 500 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 CCZ1BP86790 482 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 CCZ1P86791 482 aaPredicted RBP3.95□□□□□ -1.78
VPS29-202ENST00000447578 MYL5Q02045 173 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 MECOMQ03112 1051 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 Q0VFX4 171 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 GAGE2BQ13066 116 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 GPS2Q13227 327 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 TTC31Q49AM3 519 aaPredicted RBP3.95□□□□□ -1.78
VPS29-202ENST00000447578 GLIPR1L2Q4G1C9 344 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 GAGE2EQ4V326 116 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 KCNT1Q5JUK3 1230 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 TYW3Q6IPR3 259 aaKnown RBP3.95□□□□□ -1.78
VPS29-202ENST00000447578 GAGE2AQ6NT46 116 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 CTR9Q6PD62 1173 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 Q6ZSV7 163 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 KRTAP5-2Q701N4 177 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 MTERF4Q7Z6M4 381 aaKnown RBP3.95□□□□□ -1.78
VPS29-202ENST00000447578 FOXRED2Q8IWF2 684 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 CLYBLQ8N0X4 340 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 CLEC18CQ8NCF0 446 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 PAPD5Q8NDF8 572 aaKnown RBP3.95□□□□□ -1.78
VPS29-202ENST00000447578 OR2AJ1Q8NGZ0 328 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 SPATA20Q8TB22 786 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 HEXDCQ8WVB3 486 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 NSMAFQ92636 917 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 TEKT1Q969V4 418 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 STAMBPL1Q96FJ0 436 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 OTUB1Q96FW1 271 aaPredicted RBP3.95□□□□□ -1.78
VPS29-202ENST00000447578 BSCL2Q96G97 398 aaPredicted RBP3.95□□□□□ -1.78
VPS29-202ENST00000447578 PDLIM5Q96HC4 596 aaKnown RBP3.95□□□□□ -1.78
VPS29-202ENST00000447578 ATP6V0BQ99437 205 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 HNRNPABQ99729 332 aaKnown RBP3.95□□□□□ -1.78
VPS29-202ENST00000447578 CMKLR1Q99788 373 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 CRNKL1Q9BZJ0 848 aaKnown RBP3.95□□□□□ -1.78
VPS29-202ENST00000447578 SEMA6AQ9H2E6 1030 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 MINDY3Q9H8M7 445 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 AATFQ9NY61 560 aaKnown RBP eCLIP3.95□□□□□ -1.78
VPS29-202ENST00000447578 VPS54Q9P1Q0 977 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 IL36RNQ9UBH0 155 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 GAGE2DQ9UEU5 116 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 NARFQ9UHQ1 456 aa3.95□□□□□ -1.78
VPS29-202ENST00000447578 ERRFI1Q9UJM3 462 aaPredicted RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms