RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 CTAGE5O15320 804 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 SLC7A4O43246 635 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 KIF5CO60282 957 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 KHDRBS3O75525 346 aaKnown RBP3.97□□□□□ -1.77
CCDC54-201ENST00000261058 GOSR1O95249 250 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 AMBPP02760 352 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 FAM86B2P0C5J1 330 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 FAM157CP0CG43 387 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 TLX1P31314 330 aaPredicted RBP3.97□□□□□ -1.77
CCDC54-201ENST00000261058 CRKLP46109 303 aaKnown RBP3.97□□□□□ -1.77
CCDC54-201ENST00000261058 HSD17B7P56937 341 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 GSDMDP57764 484 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 PTENP60484 403 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 GNB1P62873 340 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 LRRC74AQ0VAA2 488 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 IFT88Q13099 833 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 TMED1Q13445 227 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 TNK1Q13470 666 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 C20orf194Q5TEA3 1177 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 SHEQ5VZ18 495 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 TXNRD3NBQ6F5E7 133 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 OR4A47Q6IF82 309 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 OTUD6AQ7L8S5 288 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 CCDC91Q7Z6B0 441 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 LGI2Q8N0V4 545 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 ZNF619Q8N2I2 560 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 GOT1L1Q8NHS2 421 aaPredicted RBP3.97□□□□□ -1.77
CCDC54-201ENST00000261058 FAM76AQ8TAV0 307 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 TAF4BQ92750 862 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 P2RX5Q93086 422 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 F2RL3Q96RI0 385 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 URM1Q9BTM9 101 aaKnown RBP3.97□□□□□ -1.77
CCDC54-201ENST00000261058 MLPHQ9BV36 600 aaPredicted RBP3.97□□□□□ -1.77
CCDC54-201ENST00000261058 MTMR12Q9C0I1 747 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 ZMYND12Q9H0C1 365 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 ACTL8Q9H568 366 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 FAM207AQ9NSI2 230 aaPredicted RBP3.97□□□□□ -1.77
CCDC54-201ENST00000261058 INTS9Q9NV88 658 aaKnown RBP3.97□□□□□ -1.77
CCDC54-201ENST00000261058 GRID1Q9ULK0 1009 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 C2CD2Q9Y426 696 aa3.97□□□□□ -1.77
CCDC54-201ENST00000261058 MSGN1A6NI15 193 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 CCDC69A6NI79 296 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 ZNF197O14709 1029 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 SLC30A4O14863 429 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 SNX3O60493 162 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 GLRA3O75311 464 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 KRT33AO76009 404 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 AP2A2O94973 939 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 TGDSO95455 350 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 EML2O95834 649 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 PAK4O96013 591 aaPredicted RBP3.96□□□□□ -1.77
CCDC54-201ENST00000261058 APOHP02749 345 aaPredicted RBP3.96□□□□□ -1.77
CCDC54-201ENST00000261058 GNB3P16520 340 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 CSTF2P33240 577 aaKnown RBP eCLIP3.96□□□□□ -1.77
CCDC54-201ENST00000261058 NKX2-1P43699 371 aaPredicted RBP3.96□□□□□ -1.77
CCDC54-201ENST00000261058 CDX1P47902 265 aaPredicted RBP3.96□□□□□ -1.77
CCDC54-201ENST00000261058 MTCP1P56278 107 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 GCNT1Q02742 428 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 RASGEF1BQ0VAM2 473 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 ILF2Q12905 390 aaKnown RBP3.96□□□□□ -1.77
CCDC54-201ENST00000261058 TAZQ16635 292 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 CTU2Q2VPK5 515 aaKnown RBP3.96□□□□□ -1.77
CCDC54-201ENST00000261058 SLC25A53Q5H9E4 307 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 UGT3A1Q6NUS8 523 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 BTN2A1Q7KYR7 527 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 NRARPQ7Z6K4 114 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 KIRREL3Q8IZU9 778 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 NUP93Q8N1F7 819 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 CNBD1Q8NA66 436 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 OR2T11Q8NH01 316 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 KCNE4Q8WWG9 221 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 SEPT1Q8WYJ6 367 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 DYRK2Q92630 601 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 TMEM143Q96AN5 459 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 LGALS12Q96DT0 336 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 CCDC43Q96MW1 224 aaKnown RBP3.96□□□□□ -1.77
CCDC54-201ENST00000261058 CITED2Q99967 270 aaPredicted RBP3.96□□□□□ -1.77
CCDC54-201ENST00000261058 THUMPD3Q9BV44 507 aaKnown RBP3.96□□□□□ -1.77
CCDC54-201ENST00000261058 PANK2Q9BZ23 570 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 DNAJB9Q9UBS3 223 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 POMT1Q9Y6A1 747 aa3.96□□□□□ -1.77
CCDC54-201ENST00000261058 DCAF1Q9Y4B6 1507 aa3.96□□□□□ -1.78
CCDC54-201ENST00000261058 ARHGEF37A1IGU5 675 aa3.95□□□□□ -1.78
CCDC54-201ENST00000261058 IFIT3O14879 490 aaKnown RBP3.95□□□□□ -1.78
CCDC54-201ENST00000261058 KLF11O14901 512 aa3.95□□□□□ -1.78
CCDC54-201ENST00000261058 FCGR3BO75015 233 aa3.95□□□□□ -1.78
CCDC54-201ENST00000261058 CDK2AP2O75956 126 aa3.95□□□□□ -1.78
CCDC54-201ENST00000261058 DDHD2O94830 711 aa3.95□□□□□ -1.78
CCDC54-201ENST00000261058 CAVIN2O95810 425 aa3.95□□□□□ -1.78
CCDC54-201ENST00000261058 BAG3O95817 575 aa3.95□□□□□ -1.78
CCDC54-201ENST00000261058 CFC1BP0CG36 223 aa3.95□□□□□ -1.78
CCDC54-201ENST00000261058 CFC1P0CG37 223 aa3.95□□□□□ -1.78
CCDC54-201ENST00000261058 SPP1P10451 314 aa3.95□□□□□ -1.78
CCDC54-201ENST00000261058 EEF2P13639 858 aaKnown RBP3.95□□□□□ -1.78
CCDC54-201ENST00000261058 PRKCIP41743 596 aa3.95□□□□□ -1.78
CCDC54-201ENST00000261058 MAGEA11P43364 429 aa3.95□□□□□ -1.78
CCDC54-201ENST00000261058 SCN1BQ07699 218 aa3.95□□□□□ -1.78
CCDC54-201ENST00000261058 SLMAPQ14BN4 828 aa3.95□□□□□ -1.78
CCDC54-201ENST00000261058 E2F5Q15329 346 aa3.95□□□□□ -1.78
CCDC54-201ENST00000261058 ALKBH5Q6P6C2 394 aaKnown RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms