RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 GALNT2Q10471 571 aa8.65□□□□□ -1.02
USP28-205ENST00000537706 KRT81Q14533 505 aa8.65□□□□□ -1.02
USP28-205ENST00000537706 PCSK7Q16549 785 aa8.65□□□□□ -1.02
USP28-205ENST00000537706 KRTAP24-1Q3LI83 254 aa8.65□□□□□ -1.02
USP28-205ENST00000537706 CMPK2Q5EBM0 449 aa8.65□□□□□ -1.02
USP28-205ENST00000537706 CPEB2Q7Z5Q1 589 aaKnown RBP8.65□□□□□ -1.02
USP28-205ENST00000537706 TBC1D21Q8IYX1 336 aa8.65□□□□□ -1.02
USP28-205ENST00000537706 C17orf53Q8N3J3 647 aaPredicted RBP8.65□□□□□ -1.02
USP28-205ENST00000537706 ZNF398Q8TD17 642 aa8.65□□□□□ -1.02
USP28-205ENST00000537706 CABS1Q96KC9 395 aa8.65□□□□□ -1.02
USP28-205ENST00000537706 CCL19Q99731 98 aa8.65□□□□□ -1.02
USP28-205ENST00000537706 OR52A5Q9H2C5 316 aa8.65□□□□□ -1.02
USP28-205ENST00000537706 YAE1D1Q9NRH1 226 aa8.65□□□□□ -1.02
USP28-205ENST00000537706 ENAMQ9NRM1 1142 aa8.65□□□□□ -1.02
USP28-205ENST00000537706 HACD3Q9P035 362 aa8.65□□□□□ -1.02
USP28-205ENST00000537706 ASF1AQ9Y294 204 aa8.65□□□□□ -1.02
USP28-205ENST00000537706 CASKO14936 926 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 FKBP9O95302 570 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 GSTM1P09488 218 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 FAM157CP0CG43 387 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 SOX5P35711 763 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 PRLHRP49683 370 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 UBASH3AP57075 661 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 GSTM4Q03013 218 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 FIGNQ5HY92 759 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 FIGLAQ6QHK4 219 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 LIX1LQ8IVB5 337 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 VSTM4Q8IW00 320 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 OR5M9Q8NGP3 310 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 RNF25Q96BH1 459 aaPredicted RBP8.64□□□□□ -1.03
USP28-205ENST00000537706 MVB12AQ96EY5 273 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 TSGA13Q96PP4 275 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 TRIB3Q96RU7 358 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 ZFYVE21Q9BQ24 234 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 SGPP1Q9BX95 441 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 TGIF2Q9GZN2 237 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 LRTM1Q9HBL6 345 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 PLSCR2Q9NRY7 297 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.64□□□□□ -1.03
USP28-205ENST00000537706 ZC3H7BQ9UGR2 993 aaKnown RBP8.64□□□□□ -1.03
USP28-205ENST00000537706 AKAP6Q13023 2319 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 CPAMD8Q8IZJ3 1885 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 NDC80O14777 642 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 KCNAB3O43448 404 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 NRDCO43847 1150 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 MMP2P08253 660 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 ACTN3Q08043 901 aaPredicted RBP8.64□□□□□ -1.03
USP28-205ENST00000537706 MESDQ14696 234 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 SLC14A2Q15849 920 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 EMC4Q5J8M3 183 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 C1orf185Q5T7R7 199 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 MFSD4BQ5TF39 518 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 LILRA3Q8N6C8 439 aaPredicted RBP8.64□□□□□ -1.03
USP28-205ENST00000537706 CCNYQ8ND76 341 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 C16orf52Q8NHV5 167 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 FLVCR1-AS1Q8TAF5 88 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 ULK4Q96C45 1275 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 ZNF285Q96NJ3 590 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 SMC6Q96SB8 1091 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 PCDHB18PQ96TA0 734 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 NRTNQ99748 197 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 NDST4Q9H3R1 872 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 MMP25Q9NPA2 562 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 PNPLA3Q9NST1 481 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 CRLS1Q9UJA2 301 aa8.64□□□□□ -1.03
USP28-205ENST00000537706 FCHO1O14526 889 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 PEX1O43933 1283 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 S1PR4O95977 384 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 HRGP04196 525 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 EIF2S1P05198 315 aaKnown RBP8.63□□□□□ -1.03
USP28-205ENST00000537706 SKILP12757 684 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 GABRA1P14867 456 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 TPH1P17752 444 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 PCK1P35558 622 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 AGTR2P50052 363 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 SORDQ00796 357 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 PLGLB1Q02325 96 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 POU4F3Q15319 338 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 WLSQ5T9L3 541 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 CDKAL1Q5VV42 579 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 RGS9BPQ6ZS82 235 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 GLT6D1Q7Z4J2 308 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 MCOLN2Q8IZK6 566 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 SMPDL3BQ92485 455 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 ZUFSPQ96AP4 578 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 MMABQ96EY8 250 aaPredicted RBP8.63□□□□□ -1.03
USP28-205ENST00000537706 PLA2G12AQ9BZM1 189 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 DEFB127Q9H1M4 99 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 CDCP1Q9H5V8 836 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 KLHL20Q9Y2M5 609 aa8.63□□□□□ -1.03
USP28-205ENST00000537706 AURKAO14965 403 aa8.62□□□□□ -1.03
USP28-205ENST00000537706 STX7O15400 261 aaKnown RBP8.62□□□□□ -1.03
USP28-205ENST00000537706 MFSD11O43934 449 aa8.62□□□□□ -1.03
USP28-205ENST00000537706 AP2A1O95782 977 aa8.62□□□□□ -1.03
USP28-205ENST00000537706 GRIA3P42263 894 aa8.62□□□□□ -1.03
USP28-205ENST00000537706 EMP3P54852 163 aa8.62□□□□□ -1.03
USP28-205ENST00000537706 NAA25Q14CX7 972 aa8.62□□□□□ -1.03
USP28-205ENST00000537706 SF1Q15637 639 aaKnown RBP8.62□□□□□ -1.03
USP28-205ENST00000537706 FBXL19-AS1Q494R0 122 aa8.62□□□□□ -1.03
USP28-205ENST00000537706 C10orf62Q5T681 223 aaPredicted RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms