RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 NME7Q9Y5B8 376 aa1.91□□□□□ -2.1
VPS13A-206ENST00000376646 PCDH11YQ9BZA8 1340 aa1.9□□□□□ -2.1
VPS13A-206ENST00000376646 A0A1W2PRB8 838 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 FAM170AA1A519 330 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 PRR32B1ATL7 298 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 E9PI62 339 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 CCDC188H7C350 402 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 GAPDHSO14556 408 aaPredicted RBP1.9□□□□□ -2.11
VPS13A-206ENST00000376646 SLC7A4O43246 635 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 DCXO43602 365 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 AP2A2O94973 939 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 FAM58BPP0C7Q3 252 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 ACADSP16219 412 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 CEBPBP17676 345 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 CDC25CP30307 473 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 B3GALT5-AS1P59052 145 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 CX3CL1P78423 397 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 PRKCZQ05513 592 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 ZNF415Q09FC8 603 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 GPR17Q13304 367 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 VEZF1Q14119 521 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 TCTEX1D4Q5JR98 221 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 ZNF613Q6PF04 617 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 C11orf57Q6ZUT1 292 aaPredicted RBP1.9□□□□□ -2.11
VPS13A-206ENST00000376646 TMEM139Q8IV31 216 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 TRIML1Q8N9V2 468 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 THAP8Q8NA92 274 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 PPFIBP2Q8ND30 876 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 NPEPL1Q8NDH3 523 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 IRGQQ8WZA9 623 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 HSD17B8Q92506 261 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 FAM162AQ96A26 154 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 THOC1Q96FV9 657 aaKnown RBP1.9□□□□□ -2.11
VPS13A-206ENST00000376646 VMP1Q96GC9 406 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 CCDC114Q96M63 670 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 SYT15Q9BQS2 421 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 GPATCH1Q9BRR8 931 aaKnown RBP1.9□□□□□ -2.11
VPS13A-206ENST00000376646 GTPBP2Q9BX10 602 aaKnown RBP1.9□□□□□ -2.11
VPS13A-206ENST00000376646 S1PR5Q9H228 398 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 ARRDC1-AS1Q9H2J1 176 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 TMED3Q9Y3Q3 217 aa1.9□□□□□ -2.11
VPS13A-206ENST00000376646 IGLV7-46A0A075B6I9 117 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 HTR3EA5X5Y0 456 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 ENO4A6NNW6 628 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 FAM86B1E9PN63 330 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 ZNF195O14628 629 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 EDN1P05305 212 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 ZFYP08048 801 aaPredicted RBP1.89□□□□□ -2.11
VPS13A-206ENST00000376646 FAM86B2P0C5J1 330 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 HSPA8P11142 646 aaKnown RBP1.89□□□□□ -2.11
VPS13A-206ENST00000376646 AZU1P20160 251 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 COPB2P35606 906 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 MAT1AQ00266 395 aaKnown RBP1.89□□□□□ -2.11
VPS13A-206ENST00000376646 ITGA7Q13683 1181 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 UGP2Q16851 508 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 ZRANB3Q5FWF4 1079 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 MOXD1Q6UVY6 613 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 LINGO4Q6UY18 593 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 ABI3BPQ7Z7G0 1075 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 P2RY8Q86VZ1 359 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 DCLK2Q8N568 766 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 HPSE2Q8WWQ2 592 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 NSMAFQ92636 917 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 MR1Q95460 341 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 CENPTQ96BT3 561 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 DHX58Q96C10 678 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 OMA1Q96E52 524 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 MAGED4Q96JG8 741 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 SGK494Q96LW2 274 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 AGAP3Q96P47 875 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 RAD9AQ99638 391 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 SLC2A11Q9BYW1 496 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 FN3KQ9H479 309 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 CDH20Q9HBT6 801 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 XAB2Q9HCS7 855 aaKnown RBP1.89□□□□□ -2.11
VPS13A-206ENST00000376646 DNAJC4Q9NNZ3 241 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 RNF186Q9NXI6 227 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 DAPK2Q9UIK4 370 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 SNX7Q9UNH6 387 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 ZHX2Q9Y6X8 837 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 H0YAE9 185 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 ATP6V0E1O15342 81 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 CSN3P07498 182 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 HAPLN1P10915 354 aaPredicted RBP1.89□□□□□ -2.11
VPS13A-206ENST00000376646 ADRA2CP18825 462 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 ACAT1P24752 427 aaKnown RBP1.89□□□□□ -2.11
VPS13A-206ENST00000376646 SLC6A6P31641 620 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 PTGER4P35408 488 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 MNDAP41218 407 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 KRT83P78385 493 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 SCN1BQ07699 218 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 CUL3Q13618 768 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 PTK6Q13882 451 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 NFE2L1Q14494 772 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 E2F5Q15329 346 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 CA9Q16790 459 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 MCMDC2Q4G0Z9 681 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 LBHQ53QV2 105 aaPredicted RBP1.89□□□□□ -2.11
VPS13A-206ENST00000376646 NHSL2Q5HYW2 709 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 ELFN2Q5R3F8 820 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms