RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-233	ENST00000642021	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	ZNF300	Q96RE9	604 aa	Predicted RBP	13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	DPH2	Q9BQC3	489 aa	Predicted RBP	13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	HMG20A	Q9NP66	347 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	SIRT5	Q9NXA8	310 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	CLEC4E	Q9ULY5	219 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	VPS4A	Q9UN37	437 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	AP3M1	Q9Y2T2	418 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	KCNE1B	A0A087WTH5	132 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021		M0R3G1	203 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	KPNA4	O00629	521 aa	Predicted RBP	13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	CCNDBP1	O95273	360 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	FADS2	O95864	444 aa	Known RBP	13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	PSMB9	P28065	219 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	TRPC1	P48995	793 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	FCGRT	P55899	365 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	B4GALNT1	Q00973	533 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	SLC8B1	Q6J4K2	584 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	HTATIP2	Q9BUP3	242 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	EBPL	Q9BY08	206 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	SLC29A3	Q9BZD2	475 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	ELOVL6	Q9H5J4	265 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	RMND5A	Q9H871	391 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	RASSF1	Q9NS23	344 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	PDP1	Q9P0J1	537 aa	Predicted RBP	13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	PAIP2B	Q9ULR5	123 aa	Known RBP	13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	GMPPB	Q9Y5P6	360 aa		13.44	□□□□□ -0.26
PHGDH-233	ENST00000642021	KCNK5	O95279	499 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	EFNA1	P20827	205 aa	Predicted RBP	13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	TUFM	P49411	452 aa	Known RBP	13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	AP1S1	P61966	158 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	SMAD3	P84022	425 aa	Known RBP	13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	BCL2L1	Q07817	233 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	SYT6	Q5T7P8	510 aa	Predicted RBP	13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	TTC29	Q8NA56	475 aa	Predicted RBP	13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	ZNF540	Q8NDQ6	660 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	ZNF641	Q96N77	438 aa	Predicted RBP	13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	PRDM8	Q9NQV8	689 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	NPIPB15	A6NHN6	443 aa	Predicted RBP	13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	YY2	O15391	372 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	DNASE1L3	Q13609	305 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	SF1	Q15637	639 aa	Known RBP	13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	INA	Q16352	499 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	P2RY8	Q86VZ1	359 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	VRK3	Q8IV63	474 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	DYNC2LI1	Q8TCX1	351 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	ADAMTS19	Q8TE59	1207 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	VOPP1	Q96AW1	172 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	TESC	Q96BS2	214 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	HHIP	Q96QV1	700 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	REXO4	Q9GZR2	422 aa	Known RBP	13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	GABARAPL1	Q9H0R8	117 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	TM9SF3	Q9HD45	589 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	NDRG4	Q9ULP0	352 aa	Known RBP	13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	SAMD4A	Q9UPU9	718 aa	Known RBP	13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	CLIC1	O00299	241 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	SLC22A1	O15245	554 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	GREM1	O60565	184 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	SCN2B	O60939	215 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	ZNF821	O75541	412 aa	Predicted RBP	13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	PRPS2	P11908	318 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	ENG	P17813	658 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	HSPA14	Q0VDF9	509 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	CDH18	Q13634	790 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	KEAP1	Q14145	624 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	GPR162	Q16538	588 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	PTCHD3	Q3KNS1	767 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	PTOV1	Q86YD1	416 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	CADM3	Q8N126	398 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	DNAJB8	Q8NHS0	232 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	OVCA2	Q8WZ82	227 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	VN1R3	Q9BXE9	311 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	ACOT13	Q9NPJ3	140 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	RABL2A	Q9UBK7	228 aa	Predicted RBP	13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	STOML2	Q9UJZ1	356 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	PNMA8B	Q9ULN7	279 aa	Predicted RBP	13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	SLC22A14	Q9Y267	594 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	TPRKB	Q9Y3C4	175 aa		13.43	□□□□□ -0.26
PHGDH-233	ENST00000642021	TBKBP1	A7MCY6	615 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	SEMG1	P04279	462 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	LCK	P06239	509 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	AMD1	P17707	334 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	KDELR2	P33947	212 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	SPAM1	P38567	509 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	HAL	P42357	657 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	WNT3	P56703	355 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	MAD2L1BP	Q15013	274 aa	Predicted RBP	13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	VMAC	Q2NL98	169 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	ATP13A5	Q4VNC0	1218 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	CATSPERE	Q5SY80	951 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	METTL2B	Q6P1Q9	378 aa	Known RBP	13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	ZNF783	Q6ZMS7	281 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	UBE2R2	Q712K3	238 aa	Predicted RBP	13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	ZZZ3	Q8IYH5	903 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	SETD9	Q8NE22	299 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	OR6Q1	Q8NGQ2	317 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	SKA2	Q8WVK7	121 aa	Predicted RBP	13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	CLSTN3	Q9BQT9	956 aa		13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	WDR12	Q9GZL7	423 aa	Known RBP	13.42	□□□□□ -0.26
PHGDH-233	ENST00000642021	NECTIN3	Q9NQS3	549 aa		13.42	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms