RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 LRRTM2O43300 516 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 GRAP2O75791 330 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 IL3P08700 152 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 PNPLA4P41247 253 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 CRATP43155 626 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 ST3GAL4Q11206 333 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 HSDL1Q3SXM5 330 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 LRIF1Q5T3J3 769 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 PAQR7Q86WK9 346 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 B3GALNT2Q8NCR0 500 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 C11orf65Q8NCR3 313 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 TMEM161BQ8NDZ6 487 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 RBM38Q9H0Z9 239 aaKnown RBP6.12□□□□□ -1.43
CLK3-212ENST00000563418 CST11Q9H112 138 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 DUSP22Q9NRW4 184 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 PPP1R14DQ9NXH3 145 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 CLTCQ00610 1675 aaKnown RBP6.12□□□□□ -1.43
CLK3-212ENST00000563418 A0A075B6Q4 140 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 NUPL2O15504 423 aaKnown RBP6.12□□□□□ -1.43
CLK3-212ENST00000563418 FAM163BP0C2L3 166 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 SERPINF1P36955 418 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 UBXN2AP68543 259 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 ORC1Q13415 861 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 PTPN20Q4JDL3 420 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 C10orf62Q5T681 223 aaPredicted RBP6.12□□□□□ -1.43
CLK3-212ENST00000563418 BCL2L15Q5TBC7 163 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 NRARPQ7Z6K4 114 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 SYNPOQ8N3V7 929 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 REPS2Q8NFH8 660 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 SCARB1Q8WTV0 552 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 RIOX1Q9H6W3 641 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 PNO1Q9NRX1 252 aaKnown RBP6.12□□□□□ -1.43
CLK3-212ENST00000563418 TMEM248Q9NWD8 314 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 NLKQ9UBE8 527 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 TRAV6A0A075B6T7 132 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 TEX13CA0A0J9YWL9 993 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 hCG_2039718K7EN88 272 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 SCAMP1O15126 338 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 SC5DO75845 299 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 ARL6IP5O75915 188 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 RAB36O95755 333 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 FGFR1P11362 822 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 GSTM3P21266 225 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 PSMB4P28070 264 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 GPC1P35052 558 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 ASMTP46597 345 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 RPL38P63173 70 aaKnown RBP6.12□□□□□ -1.43
CLK3-212ENST00000563418 SELENBP1Q13228 472 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 CLLU1Q5K131 121 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 Q8N9G6 341 aaPredicted RBP6.12□□□□□ -1.43
CLK3-212ENST00000563418 PYURFQ96I23 114 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 DOK1Q99704 481 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 AKT3Q9Y243 479 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 SMCO3A2RU48 225 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 B4GALT4O60513 344 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 RDH16O75452 317 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 RAF1P04049 648 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 IFNA6P05013 189 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 JUNP05412 331 aaKnown RBP6.12□□□□□ -1.43
CLK3-212ENST00000563418 RPS19P39019 145 aaKnown RBP6.12□□□□□ -1.43
CLK3-212ENST00000563418 BCL7AQ4VC05 210 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 ZSWIM9Q86XI8 627 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 OR5T1Q8NG75 326 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 OR52K1Q8NGK4 314 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 ELMOD3Q96FG2 381 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 TMEM176AQ96HP8 235 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 CRB3Q9BUF7 120 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 FNDC11Q9BVV2 318 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 CEP41Q9BYV8 373 aa6.12□□□□□ -1.43
CLK3-212ENST00000563418 NOSIPQ9Y314 301 aaKnown RBP6.12□□□□□ -1.43
CLK3-212ENST00000563418 KIF1AQ12756 1690 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 SLC15A5A6NIM6 579 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 EIF1AYO14602 144 aaKnown RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 SCN2BO60939 215 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 GKP32189 559 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 CPOXP36551 454 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 EIF1AXP47813 144 aaKnown RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 GRIK5Q16478 980 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 Q3C1V9 767 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 UAP1L1Q3KQV9 507 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 NHSL2Q5HYW2 709 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 CNOT9Q92600 299 aaKnown RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 FTHL17Q9BXU8 183 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 MMP28Q9H239 520 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 LHX5Q9H2C1 402 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 ITM2CQ9NQX7 267 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 ZNF358Q9NW07 568 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 DNAJC5BQ9UF47 199 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 EIF2B4Q9UI10 523 aaKnown RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 COPS3Q9UNS2 423 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 RNF215Q9Y6U7 377 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 PAPSS2O95340 614 aaPredicted RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 ITGA3P26006 1051 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 ADORA2AP29274 412 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 KIR3DL1P43629 444 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 MAP2K4P45985 399 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 TPGS1Q6ZTW0 290 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 LNX2Q8N448 690 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 OR4Q3Q8NH05 313 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms