RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ZNF449Q6P9G9 518 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 SLC27A1Q6PCB7 646 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 IYDQ6PHW0 289 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 NFE4Q86UQ8 179 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 TUSC5Q8IXB3 177 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 MAPKAPK5-AS1Q8N8E1 139 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 OR10Q1Q8NGQ4 319 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 PYCR2Q96C36 320 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 SDR39U1Q9NRG7 319 aaPredicted RBP3.78□□□□□ -1.8
VPS29-205ENST00000548539 GSN-AS1Q9NRJ2 163 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 ECHDC1Q9NTX5 307 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 ZFP57Q9NU63 452 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 SPHK1Q9NYA1 384 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 CDH7Q9ULB5 785 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 STUB1Q9UNE7 303 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 TRAV24A0A0B4J272 114 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 A0A1B0GUV1 79 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 CCL24O00175 119 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 SNX3O60493 162 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 PRKRAO75569 313 aaKnown RBP3.77□□□□□ -1.81
VPS29-205ENST00000548539 DDHD2O94830 711 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 PIGNO95427 931 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 TSHBP01222 138 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 SERPING1P05155 500 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 FGF5P12034 268 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 DARSP14868 501 aaKnown RBP3.77□□□□□ -1.81
VPS29-205ENST00000548539 SOAT1P35610 550 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 RPL21P46778 160 aaKnown RBP3.77□□□□□ -1.81
VPS29-205ENST00000548539 NR2C2P49116 596 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 CLDN15P56746 228 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 GCNT1Q02742 428 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 FOLH1Q04609 750 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 ARL16Q0P5N6 197 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 PPP2R5CQ13362 524 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 PHKG1Q16816 387 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 CDO1Q16878 200 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 KRT71Q3SY84 523 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 XKR3Q5GH77 459 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 TECRLQ5HYJ1 363 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 WDR38Q5JTN6 314 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 CASC4Q6P4E1 433 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 GDPD4Q6W3E5 623 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 CROCCP3Q8IVE0 287 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 KLHDC1Q8N7A1 406 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 DBF4BQ8NFT6 615 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 PHLDA1Q8WV24 401 aaPredicted RBP3.77□□□□□ -1.81
VPS29-205ENST00000548539 TMEM143Q96AN5 459 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 TRMT61BQ9BVS5 477 aaKnown RBP3.77□□□□□ -1.81
VPS29-205ENST00000548539 TLE6Q9H808 572 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 FAM207AQ9NSI2 230 aaPredicted RBP3.77□□□□□ -1.81
VPS29-205ENST00000548539 ABCB8Q9NUT2 735 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.77□□□□□ -1.81
VPS29-205ENST00000548539 GMEB2Q9UKD1 530 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 TNNQ9UQP3 1299 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 TRIM17Q9Y577 477 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 NOTCH3Q9UM47 2321 aa3.77□□□□□ -1.81
VPS29-205ENST00000548539 IGLV9-49A0A0B4J1Y8 123 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 OOEPA6NGQ2 149 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 ZNF197O14709 1029 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 ZNF263O14978 683 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 CTDSPLO15194 276 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 NME6O75414 186 aaPredicted RBP3.76□□□□□ -1.81
VPS29-205ENST00000548539 GOSR1O95249 250 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 CGAP01215 116 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 F7P08709 466 aaPredicted RBP3.76□□□□□ -1.81
VPS29-205ENST00000548539 ANKRD34CP0C6C1 535 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 EFNA1P20827 205 aaPredicted RBP3.76□□□□□ -1.81
VPS29-205ENST00000548539 ALDH1B1P30837 517 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 TIA1P31483 386 aaKnown RBP eCLIP3.76□□□□□ -1.81
VPS29-205ENST00000548539 DCTP40126 519 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 VAMP7P51809 220 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 GAS1P54826 345 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 HERC3Q15034 1050 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 TWISTNBQ3B726 338 aaPredicted RBP3.76□□□□□ -1.81
VPS29-205ENST00000548539 ZNF718Q3SXZ3 478 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 FAM174BQ3ZCQ3 159 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 ZNF672Q499Z4 452 aaPredicted RBP3.76□□□□□ -1.81
VPS29-205ENST00000548539 FAM76BQ5HYJ3 339 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 SUSD4Q5VX71 490 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 OR4A47Q6IF82 309 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 BTNL8Q6UX41 500 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 LINC00696Q6ZRV3 163 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 PIGWQ7Z7B1 504 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 ISCA2Q86U28 154 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 AMIGO1Q86WK6 493 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 CARNMT1Q8N4J0 409 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 MSANTD4Q8NCY6 345 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 FCAMRQ8WWV6 532 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 PTP4A1Q93096 173 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 TEKT1Q969V4 418 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 HNRNPABQ99729 332 aaKnown RBP3.76□□□□□ -1.81
VPS29-205ENST00000548539 CACNG6Q9BXT2 260 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 ZMYND12Q9H0C1 365 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 TUFT1Q9NNX1 390 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 PHPT1Q9NRX4 125 aaPredicted RBP3.76□□□□□ -1.81
VPS29-205ENST00000548539 FGF21Q9NSA1 209 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 P4HTMQ9NXG6 502 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 CNIH4Q9P003 139 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 MTRRQ9UBK8 725 aa3.76□□□□□ -1.81
VPS29-205ENST00000548539 ICAM5Q9UMF0 924 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms