RNA–Protein interactions for RNA: ENST00000512107.5

MATR3-238, Transcript of matrin 3, human

TSL 4

Gene MATR3, Length 579 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-238	ENST00000512107	KLC3	Q6P597	504 aa		14.01	□□□□□ -0.17
MATR3-238	ENST00000512107	ZYG11A	Q6WRX3	759 aa		14.01	□□□□□ -0.17
MATR3-238	ENST00000512107	FBXO39	Q8N4B4	442 aa		14.01	□□□□□ -0.17
MATR3-238	ENST00000512107	DCBLD1	Q8N8Z6	715 aa		14.01	□□□□□ -0.17
MATR3-238	ENST00000512107	PKNOX2	Q96KN3	472 aa		14.01	□□□□□ -0.17
MATR3-238	ENST00000512107	TSNARE1	Q96NA8	513 aa		14.01	□□□□□ -0.17
MATR3-238	ENST00000512107	FCRL4	Q96PJ5	515 aa		14.01	□□□□□ -0.17
MATR3-238	ENST00000512107	TMEM237	Q96Q45	408 aa		14.01	□□□□□ -0.17
MATR3-238	ENST00000512107	SMC6	Q96SB8	1091 aa		14.01	□□□□□ -0.17
MATR3-238	ENST00000512107	TRIM54	Q9BYV2	358 aa		14.01	□□□□□ -0.17
MATR3-238	ENST00000512107	CD244	Q9BZW8	370 aa		14.01	□□□□□ -0.17
MATR3-238	ENST00000512107	ZBTB26	Q9HCK0	441 aa		14.01	□□□□□ -0.17
MATR3-238	ENST00000512107	OCIAD1	Q9NX40	245 aa		14.01	□□□□□ -0.17
MATR3-238	ENST00000512107	WWOX	Q9NZC7	414 aa		14.01	□□□□□ -0.17
MATR3-238	ENST00000512107	E2F3	O00716	465 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	CTSV	O60911	334 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	RPS17	P08708	135 aa	Known RBP	14	□□□□□ -0.17
MATR3-238	ENST00000512107	CDH1	P12830	882 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	CCL4	P13236	92 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	CD22	P20273	847 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	ALDH3A1	P30838	453 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	ARRB2	P32121	409 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	ETV5	P41161	510 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	ALDH18A1	P54886	795 aa	Known RBP	14	□□□□□ -0.17
MATR3-238	ENST00000512107	MEF2A	Q02078	507 aa	Predicted RBP	14	□□□□□ -0.17
MATR3-238	ENST00000512107	TARDBP	Q13148	414 aa	Known RBP eCLIP	14	□□□□□ -0.17
MATR3-238	ENST00000512107	PUM1	Q14671	1186 aa	Known RBP eCLIP	14	□□□□□ -0.17
MATR3-238	ENST00000512107	SLC5A12	Q1EHB4	618 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	CDKL4	Q5MAI5	379 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	PHF19	Q5T6S3	580 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	CACHD1	Q5VU97	1274 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	ICE2	Q659A1	982 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	ZNF425	Q6IV72	752 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	RBM44	Q6ZP01	1051 aa	Known RBP	14	□□□□□ -0.17
MATR3-238	ENST00000512107	DGLUCY	Q7Z3D6	616 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	PRSS42	Q7Z5A4	293 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	LCA5	Q86VQ0	697 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	PLD3	Q8IV08	490 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	C10orf107	Q8IVU9	208 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	ZNF740	Q8NDX6	193 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	MDM1	Q8TC05	714 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	KLHL6	Q8WZ60	621 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	NEIL2	Q969S2	332 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	ATP6V1G3	Q96LB4	118 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	RAB11FIP5	Q9BXF6	653 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	EPB41L1	Q9H4G0	881 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107	CCDC177	Q9NQR7	707 aa	Predicted RBP	14	□□□□□ -0.17
MATR3-238	ENST00000512107	APOBEC2	Q9Y235	224 aa	Known RBP	14	□□□□□ -0.17
MATR3-238	ENST00000512107	ACTL7B	Q9Y614	415 aa		14	□□□□□ -0.17
MATR3-238	ENST00000512107		A0A0J9YY10	115 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107		E7EQ34	232 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	OR7A17	O14581	309 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	PRPF4	O43172	522 aa	Known RBP eCLIP	13.99	□□□□□ -0.17	1e-12	■■■□□ 17.9
MATR3-238	ENST00000512107	CCNT2	O60583	730 aa	Known RBP	13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	STATH	P02808	62 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	EBLN1	P0CF75	366 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	DHRS4L1	P0CG22	281 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	GFAP	P14136	432 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	FOLR1	P15328	257 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	ATP5F1	P24539	256 aa	Predicted RBP	13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	VARS	P26640	1264 aa	Known RBP	13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	HSD17B2	P37059	387 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	CCT5	P48643	541 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	PRKAA2	P54646	552 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	INHBC	P55103	352 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	CDH13	P55290	713 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	PRDX1	Q06830	199 aa	Known RBP	13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	PCBP2	Q15366	365 aa	Known RBP eCLIP	13.99	□□□□□ -0.17	2e-6	■■■□□ 17.3
MATR3-238	ENST00000512107	SF1	Q15637	639 aa	Known RBP	13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	DEFB110	Q30KQ9	67 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	ADNP2	Q6IQ32	1131 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	CAPN13	Q6MZZ7	669 aa	Predicted RBP	13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	ARMC6	Q6NXE6	501 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	FBXO42	Q6P3S6	717 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	FIGLA	Q6QHK4	219 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	LCTL	Q6UWM7	567 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	GOLGA7	Q7Z5G4	137 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	PAQR7	Q86WK9	346 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	PLXDC1	Q8IUK5	500 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	BMPER	Q8N8U9	685 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	ZNF483	Q8TF39	744 aa	Predicted RBP	13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	SLC41A2	Q96JW4	573 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	RUFY1	Q96T51	708 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	ZNF768	Q9H5H4	540 aa	Known RBP	13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	SSU72	Q9NP77	194 aa	Known RBP	13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	TNFRSF12A	Q9NP84	129 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	SIDT1	Q9NXL6	827 aa	Known RBP	13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	COPG2	Q9UBF2	871 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	ZNF225	Q9UK10	706 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	PCTP	Q9UKL6	214 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	PCDHB11	Q9Y5F2	797 aa		13.99	□□□□□ -0.17
MATR3-238	ENST00000512107	CHD6	Q8TD26	2715 aa		13.98	□□□□□ -0.17
MATR3-238	ENST00000512107	TMEM120B	A0PK00	339 aa		13.98	□□□□□ -0.17
MATR3-238	ENST00000512107	CCDC189	A1A4V9	331 aa		13.98	□□□□□ -0.17
MATR3-238	ENST00000512107	TLCD2	A6NGC4	264 aa		13.98	□□□□□ -0.17
MATR3-238	ENST00000512107	SYCE1L	A8MT33	242 aa		13.98	□□□□□ -0.17
MATR3-238	ENST00000512107	STX16-NPEPL1	H3BU86	382 aa		13.98	□□□□□ -0.17
MATR3-238	ENST00000512107		H7BY64	318 aa		13.98	□□□□□ -0.17
MATR3-238	ENST00000512107	DYNC1I1	O14576	645 aa		13.98	□□□□□ -0.17
MATR3-238	ENST00000512107	STX16	O14662	325 aa		13.98	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms