RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 PLAC1Q9HBJ0 212 aa9.96□□□□□ -0.82
TTC28-207ENST00000490475 ATP13A2Q9NQ11 1180 aa9.96□□□□□ -0.82
TTC28-207ENST00000490475 ENAMQ9NRM1 1142 aa9.96□□□□□ -0.82
TTC28-207ENST00000490475 IARS2Q9NSE4 1012 aaKnown RBP9.96□□□□□ -0.82
TTC28-207ENST00000490475 GRHL1Q9NZI5 618 aa9.96□□□□□ -0.82
TTC28-207ENST00000490475 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.96□□□□□ -0.82
TTC28-207ENST00000490475 GALPQ9UBC7 116 aa9.96□□□□□ -0.82
TTC28-207ENST00000490475 GNPTGQ9UJJ9 305 aa9.96□□□□□ -0.82
TTC28-207ENST00000490475 SLC39A10Q9ULF5 831 aa9.96□□□□□ -0.82
TTC28-207ENST00000490475 B3GNT3Q9Y2A9 372 aa9.96□□□□□ -0.82
TTC28-207ENST00000490475 CRYL1Q9Y2S2 319 aa9.96□□□□□ -0.82
TTC28-207ENST00000490475 PTRH2Q9Y3E5 179 aaKnown RBP9.96□□□□□ -0.82
TTC28-207ENST00000490475 V9GYY5 206 aaPredicted RBP9.96□□□□□ -0.82
TTC28-207ENST00000490475 SHANK1Q9Y566 2161 aa9.96□□□□□ -0.82
TTC28-207ENST00000490475 CNTRLQ7Z7A1 2325 aa9.96□□□□□ -0.82
TTC28-207ENST00000490475 PCM1Q15154 2024 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 FER1L5A0AVI2 2057 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 SNRNP200O75643 2136 aaKnown RBP9.95□□□□□ -0.82
TTC28-207ENST00000490475 HIVEP3Q5T1R4 2406 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 BLACEA4D250 179 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 A6NL46 340 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 H3BMH7 237 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 H3BMM5 538 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 AGPSO00116 658 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 SMAPO00193 183 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 SRPX2O60687 465 aaPredicted RBP9.95□□□□□ -0.82
TTC28-207ENST00000490475 GPC4O75487 556 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 HAUS5O94927 633 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 SLCO2B1O94956 709 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 ONECUT2O95948 504 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 GNLYP22749 145 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 RPS3P23396 243 aaKnown RBP eCLIP9.95□□□□□ -0.82
TTC28-207ENST00000490475 AOAHP28039 575 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 PKLRP30613 574 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 GABRA4P48169 554 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 ARL4CP56559 192 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 PDIA2Q13087 525 aaKnown RBP9.95□□□□□ -0.82
TTC28-207ENST00000490475 CALCOCO2Q13137 446 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 CRYMQ14894 314 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 TYSND1Q2T9J0 566 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 CTSL3PQ5NE16 218 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 RNF187Q5TA31 235 aaPredicted RBP9.95□□□□□ -0.82
TTC28-207ENST00000490475 SLC6A19Q695T7 634 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 ZNF470Q6ECI4 717 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 MRPL14Q6P1L8 145 aaKnown RBP9.95□□□□□ -0.82
TTC28-207ENST00000490475 VRK3Q8IV63 474 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 ZNF655Q8N720 491 aaPredicted RBP9.95□□□□□ -0.82
TTC28-207ENST00000490475 TTC29Q8NA56 475 aaPredicted RBP9.95□□□□□ -0.82
TTC28-207ENST00000490475 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.95□□□□□ -0.82
TTC28-207ENST00000490475 MNS1Q8NEH6 495 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 OR2L8Q8NGY9 312 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 FAM136AQ96C01 138 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 KLHL25Q9H0H3 589 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 SLC26A1Q9H2B4 701 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 FAM60AQ9NP50 221 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 FBXO6Q9NRD1 293 aaPredicted RBP9.95□□□□□ -0.82
TTC28-207ENST00000490475 P4HTMQ9NXG6 502 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 UTP6Q9NYH9 597 aaKnown RBP9.95□□□□□ -0.82
TTC28-207ENST00000490475 EURLQ9NYK6 297 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 WHRNQ9P202 907 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 ZC3H7BQ9UGR2 993 aaKnown RBP9.95□□□□□ -0.82
TTC28-207ENST00000490475 CHMP2BQ9UQN3 213 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 VPS9D1Q9Y2B5 631 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 UTP11Q9Y3A2 253 aaKnown RBP9.95□□□□□ -0.82
TTC28-207ENST00000490475 TEX264Q9Y6I9 313 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 CCDC88CQ9P219 2028 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 RELNP78509 3460 aa9.95□□□□□ -0.82
TTC28-207ENST00000490475 ESYT3A0FGR9 886 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 RASGRF2O14827 1237 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 PCDH17O14917 1159 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 NIPSNAP2O75323 286 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 TTC4O95801 387 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 CBSLP0DN79 551 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 CHRM3P20309 590 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 OGNP20774 298 aaKnown RBP9.94□□□□□ -0.82
TTC28-207ENST00000490475 MAGP20916 626 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 ALAS2P22557 587 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 MMP11P24347 488 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 CBSP35520 551 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 SLC1A2P43004 574 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 CARSP49589 748 aaKnown RBP9.94□□□□□ -0.82
TTC28-207ENST00000490475 PLTPP55058 493 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 MPP1Q00013 466 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 ELOAQ14241 798 aaKnown RBP9.94□□□□□ -0.82
TTC28-207ENST00000490475 FASTKD3Q14CZ7 662 aaKnown RBP9.94□□□□□ -0.82
TTC28-207ENST00000490475 TERF2Q15554 542 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 SF1Q15637 639 aaKnown RBP9.94□□□□□ -0.82
TTC28-207ENST00000490475 ZIC1Q15915 447 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 SPANXN3Q5MJ09 141 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 ZNF549Q6P9A3 640 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 CNSTQ6PJW8 725 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 OTOAQ7RTW8 1153 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 OVCH1Q7RTY7 1134 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 TRIM73Q86UV7 250 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 KCNMB4Q86W47 210 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 MCATQ8IVS2 390 aaKnown RBP9.94□□□□□ -0.82
TTC28-207ENST00000490475 RBMXL3Q8N7X1 1067 aaKnown RBP9.94□□□□□ -0.82
TTC28-207ENST00000490475 NOA1Q8NC60 698 aaKnown RBP9.94□□□□□ -0.82
TTC28-207ENST00000490475 BBOF1Q8ND07 529 aa9.94□□□□□ -0.82
TTC28-207ENST00000490475 FBXO36Q8NEA4 188 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms