RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	ACAT2	Q9BWD1	397 aa		9.83	□□□□□ -0.84
CPSF7-221	ENST00000543545	C12orf65	Q9H3J6	166 aa	Known RBP	9.83	□□□□□ -0.84
CPSF7-221	ENST00000543545	CNOT10	Q9H9A5	744 aa	Known RBP	9.83	□□□□□ -0.84
CPSF7-221	ENST00000543545	CCDC177	Q9NQR7	707 aa	Predicted RBP	9.83	□□□□□ -0.84
CPSF7-221	ENST00000543545	SPHK1	Q9NYA1	384 aa		9.83	□□□□□ -0.84
CPSF7-221	ENST00000543545	ACTR10	Q9NZ32	417 aa		9.83	□□□□□ -0.84
CPSF7-221	ENST00000543545	MID2	Q9UJV3	735 aa		9.83	□□□□□ -0.84
CPSF7-221	ENST00000543545	TMCO1	Q9UM00	188 aa		9.83	□□□□□ -0.84
CPSF7-221	ENST00000543545	PLLP	Q9Y342	182 aa		9.83	□□□□□ -0.84
CPSF7-221	ENST00000543545	PCDHGA1	Q9Y5H4	931 aa		9.83	□□□□□ -0.84
CPSF7-221	ENST00000543545	ENTPD2	Q9Y5L3	495 aa		9.83	□□□□□ -0.84
CPSF7-221	ENST00000543545	ACTL7B	Q9Y614	415 aa		9.83	□□□□□ -0.84
CPSF7-221	ENST00000543545	MYO15A	Q9UKN7	3530 aa		9.83	□□□□□ -0.84
CPSF7-221	ENST00000543545	BPTF	Q12830	3046 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	GVINP1	Q7Z2Y8	2422 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545		A0A1W2PQM1	296 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	HMGB1P1	B2RPK0	211 aa	Predicted RBP	9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545		E7ENX8	843 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	MATN2	O00339	956 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	TM4SF5	O14894	197 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	CCNT2	O60583	730 aa	Known RBP	9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	PLIN3	O60664	434 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	STK16	O75716	305 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	RASSF9	O75901	435 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	KCNK5	O95279	499 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	PROC	P04070	461 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	FTH1P19	P0C7X4	201 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	MYL2	P10916	166 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	CDK4	P11802	303 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	CPA3	P15088	417 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	UGT2B7	P16662	529 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	CDH3	P22223	829 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	ATP5F1	P24539	256 aa	Predicted RBP	9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	HPD	P32754	393 aa	Predicted RBP	9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	HSPA7	P48741	367 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	ARL4D	P49703	201 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	ALDH18A1	P54886	795 aa	Known RBP	9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	TAP2	Q03519	686 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	PTCHD3	Q3KNS1	767 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	CDKL4	Q5MAI5	379 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	DHRS13	Q6UX07	377 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	FAM92B	Q6ZTR7	304 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	SLCO6A1	Q86UG4	719 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	TRIM73	Q86UV7	250 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	SNX31	Q8N9S9	440 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	LINC01555	Q8NAE3	123 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	WDR48	Q8TAF3	677 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	PPP4R1	Q8TF05	950 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	ESAM	Q96AP7	390 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	PYCR2	Q96C36	320 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	TLCD1	Q96CP7	247 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	MIPEP	Q99797	713 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	SH3GL2	Q99962	352 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	DPYSL5	Q9BPU6	564 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	PAIP2	Q9BPZ3	127 aa	Known RBP	9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	NUDT22	Q9BRQ3	303 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	MENT	Q9BUN1	341 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	PCBD2	Q9H0N5	130 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	PRM3	Q9NNZ6	103 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	MKS1	Q9NXB0	559 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	NKIRAS1	Q9NYS0	192 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	OGFR	Q9NZT2	677 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	SLC17A7	Q9P2U7	560 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	TAC3	Q9UHF0	121 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	EMCN	Q9ULC0	261 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	DYRK1B	Q9Y463	629 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	ANGPTL3	Q9Y5C1	460 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	PCDHB11	Q9Y5F2	797 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	USP34	Q70CQ2	3546 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	ADAMTS9	Q9P2N4	1935 aa		9.82	□□□□□ -0.84
CPSF7-221	ENST00000543545	AGRP	O00253	132 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	CASC3	O15234	703 aa	Known RBP	9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	TAPBP	O15533	448 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	MAP3K7	O43318	606 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	TYROBP	O43914	113 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	DLX3	O60479	287 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	IPO13	O94829	963 aa	Known RBP	9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	WDR47	O94967	919 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	CCNDBP1	O95273	360 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	NEFH	P12036	1026 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	MTHFD2	P13995	350 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	HOXB3	P14651	431 aa	Predicted RBP	9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	CCND1	P24385	295 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	PRDX3	P30048	256 aa	Known RBP	9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	CMPK1	P30085	196 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	GDF5	P43026	501 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	AGTR2	P50052	363 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	GFER	P55789	205 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	PPP1CA	P62136	330 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	TBPL1	P62380	186 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	CLPP	Q16740	277 aa	Predicted RBP	9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	TTMP	Q5BVD1	217 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	PHF19	Q5T6S3	580 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	HHAT	Q5VTY9	493 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	CACHD1	Q5VU97	1274 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	PRAMEF13	Q5VWM6	474 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	TMEM71	Q6P5X7	295 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	WDR74	Q6RFH5	385 aa	Predicted RBP	9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	SPESP1	Q6UW49	350 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	ZYG11A	Q6WRX3	759 aa		9.81	□□□□□ -0.84

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms