RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NPPAP01160 153 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 GNPDA1P46926 289 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 TTPAP49638 278 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 RAB15P59190 212 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 MAP2K5Q13163 448 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 ATAD3BQ5T9A4 648 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 PDE12Q6L8Q7 609 aaKnown RBP20.45■□□□□ 0.86
CTCF-202ENST00000401394 FKBP9P1Q75LS8 142 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 SVOPLQ8N434 492 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 ATG16L2Q8NAA4 619 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 SLX1AQ9BQ83 275 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 DUSP21Q9H596 190 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 CLMPQ9H6B4 373 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 ORC6Q9Y5N6 252 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 TTC36A6NLP5 189 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 A8MV72 311 aaPredicted RBP20.45■□□□□ 0.86
CTCF-202ENST00000401394 SLC16A6O15403 523 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 OTCP00480 354 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 PDYNP01213 254 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 MSH3P20585 1137 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 GADD45AP24522 165 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 MRPL19P49406 292 aaKnown RBP20.45■□□□□ 0.86
CTCF-202ENST00000401394 DOC2BQ14184 412 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 CTXN3Q4LDR2 81 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 MRPL10Q7Z7H8 261 aaKnown RBP20.45■□□□□ 0.86
CTCF-202ENST00000401394 RTN4RL1Q86UN2 441 aaPredicted RBP20.45■□□□□ 0.86
CTCF-202ENST00000401394 NLGN4XQ8N0W4 816 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 CELF2-AS1Q8N7Q2 184 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 APH1BQ8WW43 257 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 DCSTAMPQ9H295 470 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 PIKFYVEQ9Y2I7 2098 aa20.44■□□□□ 0.86
CTCF-202ENST00000401394 CR2P20023 1033 aa20.44■□□□□ 0.86
CTCF-202ENST00000401394 SERPINA9Q86WD7 417 aa20.44■□□□□ 0.86
CTCF-202ENST00000401394 LYSMD2Q8IV50 215 aa20.44■□□□□ 0.86
CTCF-202ENST00000401394 CACTIN-AS1Q8N1I8 211 aa20.44■□□□□ 0.86
CTCF-202ENST00000401394 OR52J3Q8NH60 311 aa20.44■□□□□ 0.86
CTCF-202ENST00000401394 APIPQ96GX9 242 aa20.44■□□□□ 0.86
CTCF-202ENST00000401394 CPPED1Q9BRF8 314 aaPredicted RBP20.44■□□□□ 0.86
CTCF-202ENST00000401394 GPR62Q9BZJ7 368 aa20.44■□□□□ 0.86
CTCF-202ENST00000401394 OPTCQ9UBM4 332 aa20.44■□□□□ 0.86
CTCF-202ENST00000401394 TRBV5-3A0A0A0MS03 114 aa20.44■□□□□ 0.86
CTCF-202ENST00000401394 CD160O95971 181 aa20.44■□□□□ 0.86
CTCF-202ENST00000401394 F11P03951 625 aa20.44■□□□□ 0.86
CTCF-202ENST00000401394 HOXB8P17481 243 aaPredicted RBP20.44■□□□□ 0.86
CTCF-202ENST00000401394 HOXC8P31273 242 aa20.44■□□□□ 0.86
CTCF-202ENST00000401394 USP39Q53GS9 565 aaKnown RBP20.44■□□□□ 0.86
CTCF-202ENST00000401394 CLECL1Q8IZS7 167 aa20.44■□□□□ 0.86
CTCF-202ENST00000401394 TTC30BQ8N4P2 665 aa20.44■□□□□ 0.86
CTCF-202ENST00000401394 SAMHD1Q9Y3Z3 626 aaKnown RBP20.44■□□□□ 0.86
CTCF-202ENST00000401394 SLC22A1O15245 554 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 YY2O15391 372 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 VNN2O95498 520 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 CCDC159P0C7I6 412 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 PTPN6P29350 595 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 RYKP34925 604 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 IFITM2Q01629 132 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 PCBP2Q15366 365 aaKnown RBP eCLIP20.43■□□□□ 0.86
CTCF-202ENST00000401394 C9orf131Q5VYM1 1079 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 PAF1Q8N7H5 531 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 ULK4Q96C45 1275 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 GPR63Q9BZJ6 419 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 ROGDIQ9GZN7 287 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 PARVBQ9HBI1 364 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 NUDT4Q9NZJ9 180 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 DHRS7Q9Y394 339 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 LINC00854A0A1B0GVQ3 168 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 H3BNC9 293 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 AP3D1O14617 1153 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 RGS10O43665 173 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 SCELO95171 688 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 ACPPP15309 386 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 MZF1P28698 734 aaPredicted RBP20.43■□□□□ 0.86
CTCF-202ENST00000401394 EIF2DP41214 584 aaKnown RBP20.43■□□□□ 0.86
CTCF-202ENST00000401394 SLC19A1P41440 591 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 CLK1P49759 484 aaKnown RBP20.43■□□□□ 0.86
CTCF-202ENST00000401394 ST13P50502 369 aaKnown RBP20.43■□□□□ 0.86
CTCF-202ENST00000401394 RPP38P78345 283 aaKnown RBP20.43■□□□□ 0.86
CTCF-202ENST00000401394 CLLU1OSQ5K130 101 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 DESI1Q6ICB0 168 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 RFLNAQ6ZTI6 216 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 RHOXF1Q8NHV9 184 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 APOLD1Q96LR9 279 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 PPP3R2Q96LZ3 170 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 Q96MT0 163 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 NACA2Q9H009 215 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 P2RY12Q9H244 342 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 RUBCNLQ9H714 662 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 C14orf119Q9NWQ9 140 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 MANBAO00462 879 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 RGS14O43566 566 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 PRAMEF1O95521 474 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 CPSF4O95639 269 aaKnown RBP20.43■□□□□ 0.86
CTCF-202ENST00000401394 ZNF24P17028 368 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 RPL17P18621 184 aaKnown RBP20.43■□□□□ 0.86
CTCF-202ENST00000401394 EPORP19235 508 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 ARF5P84085 180 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 ILF2Q12905 390 aaKnown RBP20.43■□□□□ 0.86
CTCF-202ENST00000401394 MAD2L1BPQ15013 274 aaPredicted RBP20.43■□□□□ 0.86
CTCF-202ENST00000401394 FAM110CQ1W6H9 321 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 LRRC73Q5JTD7 316 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms