RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 SRSF5Q13243 272 aaKnown RBP10.9□□□□□ -0.66
USP3-218ENST00000560202 NAE1Q13564 534 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 RPE65Q16518 533 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 GPRIN3Q6ZVF9 776 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 SYVN1Q86TM6 617 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 KLHDC8AQ8IYD2 350 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 CLYBLQ8N0X4 340 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 AFAP1L2Q8N4X5 818 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 OR52B6Q8NGF0 335 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 GPBAR1Q8TDU6 330 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 GAB3Q8WWW8 586 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 ATP6V1E2Q96A05 226 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 SKA1Q96BD8 255 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 FAR2Q96K12 515 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 PLCD4Q9BRC7 762 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 GSDMCQ9BYG8 508 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 CAAP1Q9H8G2 361 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 SCHIP1Q9P0W5 487 aaPredicted RBP10.9□□□□□ -0.66
USP3-218ENST00000560202 FBXO4Q9UKT5 387 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 PCOLCE2Q9UKZ9 415 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 SLC22A14Q9Y267 594 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 STK38LQ9Y2H1 464 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 FIS1Q9Y3D6 152 aa10.9□□□□□ -0.66
USP3-218ENST00000560202 PLXND1Q9Y4D7 1925 aa10.9□□□□□ -0.67
USP3-218ENST00000560202 CCT8L1PA6NM43 557 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 GIPC1O14908 333 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 AZIN1O14977 448 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 BCAT2O15382 392 aaPredicted RBP10.89□□□□□ -0.67
USP3-218ENST00000560202 KATNA1O75449 491 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 EML2O95834 649 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 OTCP00480 354 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 CTSEP14091 401 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 JUNDP17535 347 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 EPORP19235 508 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 ITPKAP23677 461 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 IDH3AP50213 366 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 FOXA1P55317 472 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 NXPH1P58417 271 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 ERVPABLB-1P60509 514 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 ELF3P78545 371 aaPredicted RBP10.89□□□□□ -0.67
USP3-218ENST00000560202 KRT33BQ14525 404 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 NAA25Q14CX7 972 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 VWA5B1Q5TIE3 1220 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 LYSMD4Q5XG99 296 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 AP1ARQ63HQ0 302 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 PMS2CLQ68D20 193 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 CLEC6AQ6EIG7 209 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 EPGNQ6UW88 154 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 BMP8AQ7Z5Y6 402 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 THOC6Q86W42 341 aaKnown RBP10.89□□□□□ -0.67
USP3-218ENST00000560202 SYTL1Q8IYJ3 562 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 FBXL6Q8N531 539 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 SNX31Q8N9S9 440 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 PPFIBP2Q8ND30 876 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 OR56A3Q8NH54 315 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 MAPK15Q8TD08 544 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 MED8Q96G25 268 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 CDK15Q96Q40 435 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 KCNA7Q96RP8 456 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 EBF4Q9BQW3 602 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 STN1Q9H668 368 aaKnown RBP10.89□□□□□ -0.67
USP3-218ENST00000560202 MVB12BQ9H7P6 319 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 DNAJC11Q9NVH1 559 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 INTS7Q9NVH2 962 aaKnown RBP10.89□□□□□ -0.67
USP3-218ENST00000560202 DNAJC28Q9NX36 388 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 NOP53Q9NZM5 478 aaKnown RBP10.89□□□□□ -0.67
USP3-218ENST00000560202 APOBEC3BQ9UH17 382 aaKnown RBP10.89□□□□□ -0.67
USP3-218ENST00000560202 ZNF225Q9UK10 706 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 PLAGL1Q9UM63 463 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 SLC12A4Q9UP95 1085 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 C15orf41Q9Y2V0 281 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 HEBP2Q9Y5Z4 205 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 BDP1A6H8Y1 2624 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 MUC3AQ02505 3323 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 A6NCN8 305 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 E7ENX8 843 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 VILLO15195 856 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 HRO43593 1189 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 DIAPH2O60879 1101 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 CRCPO75575 148 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 OR4F21O95013 312 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 CSF2P04141 144 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 MTHFD1P11586 935 aaKnown RBP10.89□□□□□ -0.67
USP3-218ENST00000560202 F3P13726 295 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 NME1P15531 152 aaKnown RBP10.89□□□□□ -0.67
USP3-218ENST00000560202 PAX7P23759 505 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 CCND1P24385 295 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 SERPINB3P29508 390 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 HSD17B2P37059 387 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 ARL1P40616 181 aaPredicted RBP10.89□□□□□ -0.67
USP3-218ENST00000560202 DHPSP49366 369 aaPredicted RBP10.89□□□□□ -0.67
USP3-218ENST00000560202 CSNK1EP49674 416 aaKnown RBP10.89□□□□□ -0.67
USP3-218ENST00000560202 AFF3P51826 1226 aaKnown RBP10.89□□□□□ -0.67
USP3-218ENST00000560202 CCNG1P51959 295 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 PNLIPRP1P54315 467 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 TAP2Q03519 686 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 TRAF3Q13114 568 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 ARHGAP19Q14CB8 494 aa10.89□□□□□ -0.67
USP3-218ENST00000560202 RBBP5Q15291 538 aaKnown RBP10.89□□□□□ -0.67
USP3-218ENST00000560202 PDCD2Q16342 344 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms