RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 RTFDC1Q9BY42 306 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-209ENST00000472056 ZDHHC6Q9H6R6 413 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 P2RX2Q9UBL9 471 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 TNFRSF10DQ9UBN6 386 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 LRRTM2O43300 516 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 BPNT1O95861 308 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 SIM2Q14190 667 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-209ENST00000472056 PGAP1Q75T13 922 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 ATAD1Q8NBU5 361 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 PDCD2LQ9BRP1 358 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 NLGN3Q9NZ94 848 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 TBC1D14Q9P2M4 693 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 IFT52Q9Y366 437 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 LRATO95237 230 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 SLC25A14O95258 325 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-209ENST00000472056 CTBP1Q13363 440 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 RAVER1Q8IY67 606 aaKnown RBP13.06□□□□□ -0.32
COL6A3-209ENST00000472056 RPLP0P6Q8NHW5 317 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 TBATAQ96M53 351 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 ACO2Q99798 780 aaKnown RBP13.06□□□□□ -0.32
COL6A3-209ENST00000472056 STXBP5LQ9Y2K9 1186 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 ASB4Q9Y574 426 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 NUP98P52948 1817 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 ARL5CA6NH57 179 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 IFI30P13284 250 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 RPL10P27635 214 aaKnown RBP13.06□□□□□ -0.32
COL6A3-209ENST00000472056 CD40LGP29965 261 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 CENPSQ8N2Z9 138 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 FCAMRQ8WWV6 532 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 MEPEQ9NQ76 525 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-209ENST00000472056 TMEM45AQ9NWC5 275 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 OXSMQ9NWU1 459 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 SLC7A8Q9UHI5 535 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 OAZ3Q9UMX2 235 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 RNF6Q9Y252 685 aa13.06□□□□□ -0.32
COL6A3-209ENST00000472056 RFPL1O75677 317 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 PDYNP01213 254 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 ANXA4P09525 319 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 GLUD2P49448 558 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 FAAH2Q6GMR7 532 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 TUBB1Q9H4B7 451 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 MRM3Q9HC36 420 aaKnown RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 UCKL1Q9NWZ5 548 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 TAS2R9Q9NYW1 312 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 TCAF1Q9Y4C2 921 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 A0A1W2PP18 115 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 RAB19A4D1S5 217 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 RGS19P49795 217 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 GRK1Q15835 563 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 OGFRL1Q5TC84 451 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 SLC43A3Q8NBI5 491 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 HCN2Q9UL51 889 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 ERCC1P07992 297 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 IL7RP16871 459 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 RPIAP49247 311 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 GDI2P50395 445 aaKnown RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 RPL7AP62424 266 aaKnown RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 RAB41Q5JT25 222 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 OR10A6Q8NH74 314 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 SETD6Q8TBK2 473 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 ZFP3Q96NJ6 502 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 FEM1AQ9BSK4 669 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 ULBP1Q9BZM6 244 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 PTTG3PQ9NZH4 202 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 EXOSC1Q9Y3B2 195 aaKnown RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 SLC35G6P0C7Q6 338 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 MAGEA6P43360 314 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 POU4F2Q12837 409 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 COLEC12Q5KU26 742 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 NCEH1Q6PIU2 408 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 RELL1Q8IUW5 271 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 LNX1Q8TBB1 728 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 SLC45A3Q96JT2 553 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 CNOT6Q9ULM6 557 aaKnown RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 TMEM131LA2VDJ0 1609 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 ERMP1Q7Z2K6 904 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 MARVELD2Q8N4S9 558 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 TSNAXQ99598 290 aaKnown RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 CASTOR2A6NHX0 329 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 CREBL2O60519 120 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 CSDE1O75534 798 aaKnown RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 ENDOUP21128 410 aaKnown RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 BDNFP23560 247 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 CHMP24386 653 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 SCNN1AP37088 669 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 ATXN1P54253 815 aaKnown RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 TARDBPQ13148 414 aaKnown RBP eCLIP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 CERCAMQ5T4B2 595 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 CAND1Q86VP6 1230 aaKnown RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 OR8D1Q8WZ84 308 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 SLC29A3Q9BZD2 475 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 TMEM39BQ9GZU3 492 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 RGCCQ9H4X1 137 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 NDOR1Q9UHB4 597 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 MED31Q9Y3C7 131 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 WASF2Q9Y6W5 498 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 NID2Q14112 1375 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 MT-ND5P03915 603 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 CRADDP78560 199 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 CRB2Q5IJ48 1285 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms